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SCNpilot_expt_500_p_scaffold_4136_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4136_curated_1
Rickettsiales bacterium SCGC AAA041-L04, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29..1504
DNA (1476bp) protein (492aa)
Conserved domain protein n=2 Tax=Escherichia coli RepID=A7ZND6_ECO24
Conserved domain protein n=2 Tax=Escherichia coli RepID=A7ZND6_ECO24
Uncharacterized protein {ECO:0000313|EMBL:KKB96501.1}; TaxID=1607817 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium SCGC AAA041-L04.;"
Uncharacterized protein {ECO:0000313|EMBL:KKB96501.1}; TaxID=1607817 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium SCGC AAA041-L04.;"
SCNpilot_expt_500_p_scaffold_4136_curated_2
unknown

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1521..1682
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_4136_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1759..2097
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13424.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13424.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2108..2401
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDC
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDC
Uncharacterized protein {ECO:0000313|EMBL:AIL12625.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL12625.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2398..2967
DNA (570bp) protein (190aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13425.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13425.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Type IV conjugative transfer system protein TraE id=4756792 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Type IV conjugative transfer system protein TraE id=4756792 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_expt_500_p_scaffold_4136_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2960..3658
DNA (699bp) protein (233aa)
IncF plasmid conjugative transfer pilus assembly protein TraK n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBT1_9GAMM
IncF plasmid conjugative transfer pilus assembly protein TraK n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBT1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIL13426.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13426.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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3655..4929
DNA (1275bp) protein (425aa)
putative conjugative transfer protein TraB n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDF
putative conjugative transfer protein TraB n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDF
traB; F pilus assembly protein TraB; K12065 conjugal transfer pilus assembly protein TraB
traB; F pilus assembly protein TraB; K12065 conjugal transfer pilus assembly protein TraB
SCNpilot_expt_500_p_scaffold_4136_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4926..5267
DNA (342bp) protein (114aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13427.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13427.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5267..7765
DNA (2499bp) protein (833aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSF5_9BACT
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSF5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13428.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13428.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7762..8103
DNA (342bp) protein (114aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13429.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13429.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_11
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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8100..8600
DNA (501bp) protein (167aa)
Peptidase S26, conserved region n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEK1_GALCS
Peptidase S26, conserved region n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEK1_GALCS
Peptidase S26, conserved region; K12062 conjugal transfer pilin signal peptidase TrbI
Peptidase S26, conserved region; K12062 conjugal transfer pilin signal peptidase TrbI
SCNpilot_expt_500_p_scaffold_4136_curated_12

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8575..9210
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE5
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE5
Uncharacterized protein {ECO:0000313|EMBL:EKE08833.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein {ECO:0000313|EMBL:EKE08833.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_p_scaffold_4136_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9203..9511
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13430.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13430.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9508..9774
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13431.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein {ECO:0000313|EMBL:AIL13431.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_4136_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9779..10414
DNA (636bp) protein (212aa)
conjugal transfer protein TraU n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE7
conjugal transfer protein TraU n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE7
Conjugal transfer protein {ECO:0000313|EMBL:AIL13432.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Conjugal transfer protein {ECO:0000313|EMBL:AIL13432.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying 15 items

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