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SCNpilot_cont_500_bf_scaffold_340_curated

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_340_curated_1
Mycobacterium parascrofulaceum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..246)
DNA (246bp) protein (82aa)
Integrase core domain protein n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5P1K7_9MYCO
Integrase core domain protein {ECO:0000313|EMBL:EFG80042.1}; TaxID=525368 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium parascrofulaceum ATCC BAA-614.;"
transposase
SCNpilot_cont_500_bf_scaffold_340_curated_2
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

502..732
DNA (231bp) protein (77aa)
Transposase IS3/IS911 family protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A0J0_CELGA
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AEI12675.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
SCNpilot_cont_500_bf_scaffold_340_curated_3
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

860..1537
DNA (678bp) protein (226aa)
Integrase catalytic region n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A3J5_CELGA
Integrase {ECO:0000313|EMBL:KGM08441.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
Integrase catalytic region
SCNpilot_cont_500_bf_scaffold_340_curated_4
unknown

Not on your lists

comp(1547..1795)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_340_curated_5
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1914..2843)
DNA (930bp) protein (310aa)
fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4]
Ribokinase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIX5_9ACTO
Ribokinase {ECO:0000313|EMBL:KGM15870.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
SCNpilot_cont_500_bf_scaffold_340_curated_6
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2840..3838)
DNA (999bp) protein (333aa)
Putative LacI family transcriptional regulator n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KXB9_OSCVS
putative LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Putative LacI family transcriptional regulator {ECO:0000313|EMBL:BAL00928.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
SCNpilot_cont_500_bf_scaffold_340_curated_7
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3853..5943)
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9L0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS08803.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
SCNpilot_cont_500_bf_scaffold_340_curated_8
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5943..6749)
DNA (807bp) protein (269aa)
ABC transporter, permease protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9L6_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS08809.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ABC-type sugar transport system, permease component
SCNpilot_cont_500_bf_scaffold_340_curated_9
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6752..7648)
DNA (897bp) protein (299aa)
ABC transporter, permease protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9L5_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS08808.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ABC-type sugar transport systems, permease components
SCNpilot_cont_500_bf_scaffold_340_curated_10
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7750..9039)
DNA (1290bp) protein (430aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LVV0_9FIRM
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL21753.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
SCNpilot_cont_500_bf_scaffold_340_curated_11
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9087..10439)
DNA (1353bp) protein (451aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LVU9_9FIRM
Protein of unknown function (DUF2961).
Uncharacterized protein {ECO:0000313|EMBL:CBL21752.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
SCNpilot_cont_500_bf_scaffold_340_curated_12
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11192..14110)
DNA (2919bp) protein (973aa)
hypothetical protein n=1 Tax=Nocardiopsis sp. CNS639 RepID=UPI0003771869
Uncharacterized protein {ECO:0000313|EMBL:KGM11891.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
Peptidoglycan-binding LysM
SCNpilot_cont_500_bf_scaffold_340_curated_13
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14107..14550)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI0003760211
Uncharacterized protein {ECO:0000313|EMBL:KGM17916.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_340_curated_14
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14547..14972)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000373D9F9
Membrane protein {ECO:0000313|EMBL:KGM12784.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
TadE-like protein
SCNpilot_cont_500_bf_scaffold_340_curated_15
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14969..15382)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00037AE89E
Uncharacterized protein {ECO:0000313|EMBL:KGM12783.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
TadE family protein
SCNpilot_cont_500_bf_scaffold_340_curated_16
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15382..15582)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM12819.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
SCNpilot_cont_500_bf_scaffold_340_curated_17
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15595..16494)
DNA (900bp) protein (300aa)
Type II secretion system F domain protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S7F0_GEOOG
Type II secretion protein F {ECO:0000313|EMBL:EYR65233.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
Type II secretion system F domain-containing protein
SCNpilot_cont_500_bf_scaffold_340_curated_18
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16491..17354)
DNA (864bp) protein (288aa)
Type II secretion system F domain protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S7E9_GEOOG
Membrane protein {ECO:0000313|EMBL:EYR65234.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
Type II secretion system F domain-containing protein
SCNpilot_cont_500_bf_scaffold_340_curated_19
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17351..18790)
DNA (1440bp) protein (480aa)
Flp pilus assembly protein, ATPase CpaF n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RKJ3_BLASD
ATP/GTP-binding protein {ECO:0000313|EMBL:KGM03925.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
Flp pilus assembly protein, ATPase CpaF
SCNpilot_cont_500_bf_scaffold_340_curated_20
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18787..19365)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI000376FF94
Uncharacterized protein {ECO:0000313|EMBL:KGM11878.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_340_curated_21
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19551..20228)
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4UZR8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGM12779.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_340_curated_22
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20269..21072)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Salinispora arenicola RepID=UPI00036D90BB
ATP/GTP-binding protein {ECO:0000313|EMBL:EYR65238.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
putative ATP/GTP-binding protein
SCNpilot_cont_500_bf_scaffold_340_curated_23
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21165..21527)
DNA (363bp) protein (121aa)
Putative secreted protein/lipoprotein n=1 Tax=Streptomyces zinciresistens K42 RepID=G2G440_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EYR65239.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
SCNpilot_cont_500_bf_scaffold_340_curated_24
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21975..22841)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI000370D712
Uncharacterized protein {ECO:0000313|EMBL:EYR65314.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
SCNpilot_cont_500_bf_scaffold_340_curated_25
Mycobacterium llatzerense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23728..24675
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1T9X9_MYCVP
Mycobacterium llatzerense strain CLUC14 Mllat_contig000095, whole genome shotgun sequence {ECO:0000313|EMBL:KIU13545.1}; TaxID=280871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium llatzerense.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_340_curated_26
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25097..25294
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR62729.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
SCNpilot_cont_500_bf_scaffold_340_curated_trna_1
unknown

Not on your lists

comp(25365..25436)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_340_curated_27
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25562..26197
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GZ54_CELFA
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AEE47170.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_500_bf_scaffold_340_curated_28
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26207..26716
DNA (510bp) protein (170aa)
Transcriptional regulator, MarR family n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A6P7_CELGA
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEI11107.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
SCNpilot_cont_500_bf_scaffold_340_curated_29
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26713..27942
DNA (1230bp) protein (410aa)
Major facilitator superfamily MFS_1 n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UK35_CELFN
major facilitator superfamily protein; K03449 MFS transporter, CP family, cyanate transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG73777.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
Displaying items 1-30 of 87 in total

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