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SCNpilot_expt_500_p_scaffold_1545_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1545_curated_1
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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3..710
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Brevibacillus laterosporus LMG 15441 RepID=F7TUV1_BRELA
Collagen triple helix repeat (20 copies) {ECO:0000313|EMBL:CDZ79954.1}; Flags: Precursor;; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1545_curated_2
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(778..1011)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MF96_PARUW
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:CDZ79955.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1545_curated_3
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(1134..2819)
DNA (1686bp) protein (562aa)
60 kDa chaperonin n=2 Tax=Parachlamydia acanthamoebae RepID=F8KVM1_PARAV
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
groEL-A; heat shock protein 60; K04077 chaperonin GroEL
SCNpilot_expt_500_p_scaffold_1545_curated_4
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(2847..3140)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=2 Tax=Waddlia chondrophila RepID=D6YSZ2_WADCW
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
groES3; Co-chaperonin GroES; K04078 chaperonin GroES
SCNpilot_expt_500_p_scaffold_1545_curated_5
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(3267..4538)
DNA (1272bp) protein (424aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MF93_PARUW
Uncharacterized protein {ECO:0000313|EMBL:CDZ79958.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1545_curated_6
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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4760..8407
DNA (3648bp) protein (1216aa)
putA; bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12] rbh
Putative bifunctional protein (Proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase) n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MF92_PARUW
Bifunctional protein PutA {ECO:0000313|EMBL:CDZ79959.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_1545_curated_7
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

8412..10661
DNA (2250bp) protein (750aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
mutD; ATP-dependent DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
Probable ATP-dependent DNA helicase n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MF91_PARUW
SCNpilot_expt_500_p_scaffold_1545_curated_8
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(10699..11319)
DNA (621bp) protein (207aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
nth; putative endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L5U7_SIMNZ
SCNpilot_expt_500_p_scaffold_1545_curated_9
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(11334..12710)
DNA (1377bp) protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] rbh
tRNA modification GTPase MnmE n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=MNME_PARUW rbh
SCNpilot_expt_500_p_scaffold_1545_curated_10
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

12841..13725
DNA (885bp) protein (295aa)
Putative succinate dehydrogenase cytochrome b558 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MA32_PARUW
Succinate dehydrogenase cytochrome b558 subunit {ECO:0000313|EMBL:CDZ79963.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
sdhC; succinate dehydrogenase cytochrome b558; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_500_p_scaffold_1545_curated_11
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

13736..15613
DNA (1878bp) protein (626aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
Probable succinate dehydrogenase flavoprotein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MA33_PARUW
Fumarate reductase flavoprotein subunit {ECO:0000313|EMBL:CDZ79964.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_1545_curated_12
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

15804..16109
DNA (306bp) protein (102aa)
sdhB; succinate dehydrogenase iron-sulfur protein subunit B; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Waddlia chondrophila 2032/99 RepID=F8LFI1_9CHLA
Fumarate reductase iron-sulfur subunit {ECO:0000313|EMBL:CDZ79965.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
Displaying 12 items

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