ggKbase home page

SCNpilot_cont_500_bf_scaffold_4464_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4464_curated_1
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3..701
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ80035.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
SCNpilot_cont_500_bf_scaffold_4464_curated_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

763..1800
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B53466
Uncharacterized protein {ECO:0000313|EMBL:AIE83935.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4464_curated_3
unknown

Not on your lists

1966..3081
DNA (1116bp) protein (372aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_4
unknown

Not on your lists

comp(3349..6465)
DNA (3117bp) protein (1039aa)
zinc finger chc2-family protein
SCNpilot_cont_500_bf_scaffold_4464_curated_5
unknown

Not on your lists

comp(6794..7561)
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_6
unknown

Not on your lists

comp(7613..8263)
DNA (651bp) protein (217aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_7
unknown

Not on your lists

comp(8292..10892)
DNA (2601bp) protein (867aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI000366DE67
SCNpilot_cont_500_bf_scaffold_4464_curated_8
Yersinia aldovae, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10908..12968)
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6D4_UNCMA
Rhs element Vgr family protein {ECO:0000313|EMBL:AJJ61660.1}; TaxID=1453495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia aldovae 670-83.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4464_curated_9
unknown

Not on your lists

comp(13001..13324)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_10
unknown

Not on your lists

comp(13321..14412)
DNA (1092bp) protein (364aa)
Glycoprotein gp2 (Fragment) n=1 Tax=Epinephelus bruneus RepID=G1FKG7_9PERO
SCNpilot_cont_500_bf_scaffold_4464_curated_11
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14419..15276)
DNA (858bp) protein (286aa)
chitosanase n=1 Tax=Laceyella sacchari RepID=UPI0003B69647
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AEI38551.1}; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
SCNpilot_cont_500_bf_scaffold_4464_curated_12
GWC2_TM7_48_9, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(15286..18297)
DNA (3012bp) protein (1004aa)
Type IV secretory pathway VirB4 components-like protein id=4168125 bin=GWC2_TM7_48_9 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
Type IV secretory pathway VirB4 component-like protein {ECO:0000313|EMBL:KKW02919.1}; TaxID=1619071 species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium GW2011_GWC2_48_9.;"
Type IV secretory pathway VirB4 protein-like protein
SCNpilot_cont_500_bf_scaffold_4464_curated_13
unknown

Not on your lists

comp(18304..18723)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_14
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18748..20712)
DNA (1965bp) protein (655aa)
Jannaschia aquimarina strain GSW-M26 jaqu_contig000031, whole genome shotgun sequence {ECO:0000313|EMBL:KIT16566.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
hypothetical protein cdiviTM7_00597 id=5226248 bin=RAAC3_TM7 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=RAAC3_TM7 organism_group=TM7
SCNpilot_cont_500_bf_scaffold_4464_curated_15
unknown

Not on your lists

comp(20800..21195)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_16
unknown

Not on your lists

comp(21267..22808)
DNA (1542bp) protein (514aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_17
unknown

Not on your lists

23082..23588
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_18
unknown

Not on your lists

23624..24190
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_19
unknown

Not on your lists

24197..25504
DNA (1308bp) protein (436aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_20

Not on your lists

25497..26645
DNA (1149bp) protein (383aa)
geranylgeranyl reductase id=5042052 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Geranylgeranyl reductase {ECO:0000313|EMBL:KHO48003.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
geranylgeranyl reductase
SCNpilot_cont_500_bf_scaffold_4464_curated_21
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(27101..27649)
DNA (549bp) protein (183aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZMF4_ANACC
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AFZ60381.1}; TaxID=272123 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
SCNpilot_cont_500_bf_scaffold_4464_curated_22
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28038..28433)
DNA (396bp) protein (132aa)
ArsR family transcriptional regulator n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI000365436B
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
SPG23_c1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29314.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
SCNpilot_cont_500_bf_scaffold_4464_curated_23
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(28703..29134)
DNA (432bp) protein (144aa)
Major facilitator superfamily MFS_1 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAD9_SPHTD
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACZ40782.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_500_bf_scaffold_4464_curated_24
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(29887..31272)
DNA (1386bp) protein (462aa)
FAD dependent oxidoreductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TS26_9CHLR
FAD dependent oxidoreductase {ECO:0000313|EMBL:EFH86099.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4464_curated_25
unknown

Not on your lists

comp(31371..31559)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_26
unknown

Not on your lists

comp(31667..31825)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4464_curated_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(31959..32930)
DNA (972bp) protein (324aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036AA284
Tax=CSP1_6_Rokubacteria
SCNpilot_cont_500_bf_scaffold_4464_curated_28
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(32969..33436)
DNA (468bp) protein (156aa)
Transcriptional regulator, MarR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TS28_9CHLR
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFH86101.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4464_curated_29

Not on your lists

33630..34052
DNA (423bp) protein (141aa)
MerR family transcriptional regulator n=1 Tax=Desulfovibrio longus RepID=UPI0003B2F46A
Uncharacterized protein {ECO:0000313|EMBL:KKM69838.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cueR; DNA-binding transcriptional activator of copper-responsive regulon genes
SCNpilot_cont_500_bf_scaffold_4464_curated_30
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34052..35296
DNA (1245bp) protein (415aa)
Major facilitator superfamily MFS_1 n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RN92_BLASD
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCG02640.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Displaying items 1-30 of 33 in total

View Taxonomy