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SCNpilot_cont_500_bf_scaffold_1773_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1773_curated_1
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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3..218
DNA (216bp) protein (72aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
xylA; xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5]
Xylose isomerase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TD36_9CHLR
SCNpilot_cont_500_bf_scaffold_1773_curated_2
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(275..1102)
DNA (828bp) protein (276aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HPL7_CYAP4
Phosphoglycerate mutase {ECO:0000313|EMBL:ACL43878.1}; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
SCNpilot_cont_500_bf_scaffold_1773_curated_3
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

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comp(1192..1671)
DNA (480bp) protein (160aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U7N1_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_cont_500_bf_scaffold_1773_curated_4
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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1918..3381
DNA (1464bp) protein (488aa)
polynucleotide adenylyltransferase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRF4_ROSCS
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase {ECO:0000313|EMBL:ABU60150.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_500_bf_scaffold_1773_curated_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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4107..6725
DNA (2619bp) protein (873aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=14426276 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin1_lowGC organism_group=Unknown_CP
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=CSP1_2_Dadabacteria
SCNpilot_cont_500_bf_scaffold_1773_curated_6
Chloroflexus sp. Y-400-fl, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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7094..7858
DNA (765bp) protein (255aa)
Probable transcriptional regulatory protein Caur_1043 n=2 Tax=Chloroflexus RepID=Y1043_CHLAA
hypothetical protein
Probable transcriptional regulatory protein Chy400_1141 {ECO:0000255|HAMAP-Rule:MF_00693}; TaxID=480224 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl).;"
SCNpilot_cont_500_bf_scaffold_1773_curated_7
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7881..8507
DNA (627bp) protein (209aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=913865 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. OT.;"
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Desulfosporosinus sp. OT RepID=G2FPW8_9FIRM
SCNpilot_cont_500_bf_scaffold_1773_curated_8
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

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8599..9588
DNA (990bp) protein (330aa)
GCN5-related N-acetyltransferase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2H7_SPHTD
N-acetyltransferase GCN5
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
SCNpilot_cont_500_bf_scaffold_1773_curated_9
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9644..11044)
DNA (1401bp) protein (467aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3]
RNA-splicing ligase RtcB n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MTG5_CORCM
SCNpilot_cont_500_bf_scaffold_1773_curated_10
unknown

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comp(11242..11733)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1773_curated_11
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11771..12283)
DNA (513bp) protein (171aa)
Chemotaxis protein CheW n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0K799_9FIRM
cheW; CheA activity modulator protein; K03408 purine-binding chemotaxis protein CheW
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_cont_500_bf_scaffold_1773_curated_12
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(12280..12672)
DNA (393bp) protein (131aa)
Two-component response regulator id=4691835 bin=GWA2__Bacteriovorax-rel_49_15 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
winged helix family two component transcriptional regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
Tax=GWA2_Bdellovibrionales_49_15_curated
SCNpilot_cont_500_bf_scaffold_1773_curated_13
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12820..14094)
DNA (1275bp) protein (425aa)
Imidazolonepropionase n=1 Tax=Bhargavaea cecembensis DSE10 RepID=M7P342_9BACL
amidohydrolase
Tax=RBG_16_Deltaproteobacteria_50_11_curated
SCNpilot_cont_500_bf_scaffold_1773_curated_14
Geobacillus sp. WCH70, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14399..15475
DNA (1077bp) protein (359aa)
Integrase family protein n=1 Tax=Geobacillus sp. (strain WCH70) RepID=C5D6Y7_GEOSW
integrase
Integrase family protein {ECO:0000313|EMBL:ACS25526.1}; TaxID=471223 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain WCH70).;"
SCNpilot_cont_500_bf_scaffold_1773_curated_15
unknown

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comp(15494..15670)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1773_curated_16
unknown

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comp(15876..16541)
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1773_curated_17
unknown

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comp(16623..16826)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1773_curated_18
unknown

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17151..17438
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1773_curated_19
unknown

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17457..17789
DNA (333bp) protein (111aa)

This feature has no annotations

Displaying 19 items

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