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SCNpilot_cont_300_bf_scaffold_164_curated

Search features with annotation key words

Displaying items 1-30 of 356 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_164_curated_1
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(277..2913)
DNA (2637bp) protein (879aa)
hypothetical protein id=24440321 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Bacteroides faecis CAG:32 genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
SCNpilot_cont_300_bf_scaffold_164_curated_2
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(2939..5554)
DNA (2616bp) protein (872aa)
Glycoside hydrolase family 38 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHV9_THET1
glycoside hydrolase family protein
Glycoside hydrolase family 38 {ECO:0000313|EMBL:ACZ43330.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_cont_300_bf_scaffold_164_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5591..6688)
DNA (1098bp) protein (366aa)
3-carboxymuconate cyclase-like n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CHI3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL25764.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
3-carboxymuconate cyclase
SCNpilot_cont_300_bf_scaffold_164_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6936..8159
DNA (1224bp) protein (408aa)
Glucarate dehydratase {ECO:0000313|EMBL:CDP51152.1}; EC=4.2.1.40 {ECO:0000313|EMBL:CDP51152.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative Glucarate dehydratase (EC:4.2.1.40)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FCDB7
SCNpilot_cont_300_bf_scaffold_164_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8168..9256
DNA (1089bp) protein (363aa)
Maltose/maltodextrin transport ATP-binding protein MalK {ECO:0000313|EMBL:CDP51153.1}; EC=3.6.3.19 {ECO:0000313|EMBL:CDP51153.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380FF52
ABC transporter ATPase; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_164_curated_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9290..10528
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036FF377
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:CDP51154.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative sugar ABC transporter binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_164_curated_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10644..11588
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E3FC1
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF {ECO:0000313|EMBL:CDP51155.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
binding-protein-dependent transporter inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_164_curated_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11596..12483
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003691510
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDP51156.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_164_curated_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12497..13243
DNA (747bp) protein (249aa)
UPI0003CE11F9 related cluster n=1 Tax=unknown RepID=UPI0003CE11F9
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDP51157.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_164_curated_10
RLO_PLX_64_10, Bacteria

Not on your lists

13335..14225
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036063F9
sugar phosphate isomerase/epimerase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_cont_300_bf_scaffold_164_curated_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

14222..14980
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000374854F
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCNpilot_cont_300_bf_scaffold_164_curated_12
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15354..16304)
DNA (951bp) protein (317aa)
Ribose ABC transporter, periplasmic ribose-binding protein RbsB n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RPS2_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKC33784.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
ribose ABC transporter, periplasmic ribose-binding protein RbsB; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_164_curated_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16358..17362)
DNA (1005bp) protein (335aa)
ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB73C8
ABC transporter permease {ECO:0000313|EMBL:KKB76470.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
inner-membrane translocator; K10440 ribose transport system permease protein
SCNpilot_cont_300_bf_scaffold_164_curated_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17343..18884)
DNA (1542bp) protein (514aa)
ribose ABC transport system, ATP-binding protein RbsA; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S0_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKC33826.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_cont_300_bf_scaffold_164_curated_15
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19095..20114
DNA (1020bp) protein (340aa)
Transcriptional (Co)regulator CytR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6S1_PELHB
LacI family transcriptional regulator {ECO:0000313|EMBL:KKC41411.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
transcriptional (co)regulator CytR; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
SCNpilot_cont_300_bf_scaffold_164_curated_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20467..21486
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P094_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40731.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
substrate-binding region of ABC-type glycine betaine transport system; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_164_curated_17
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21617..22489
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000364B888
ABC transporter permease {ECO:0000313|EMBL:KKB85484.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative binding-protein-dependent transport protein
SCNpilot_cont_300_bf_scaffold_164_curated_18
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22486..23559
DNA (1074bp) protein (358aa)
glycine betaine ABC transporter ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
glycine/betaine ABC transporter n=1 Tax=Kaistia granuli RepID=UPI00037419AD
Glycine/betaine ABC transporter {ECO:0000313|EMBL:KKC37324.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_cont_300_bf_scaffold_164_curated_19
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23556..24386
DNA (831bp) protein (277aa)
UspA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIW9_9PROT
UspA {ECO:0000313|EMBL:EDP66594.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
UspA-related nucleotide-binding protein
SCNpilot_cont_300_bf_scaffold_164_curated_20
unknown

Not on your lists

24756..25001
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_164_curated_21
unknown

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24998..25213
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_164_curated_22
Paenibacillus sp. IHBB 10380, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25343..26200
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI000305CD31
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AJS58872.1}; TaxID=1566358 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. IHBB 10380.;"
aminoglycoside phosphotransferase
SCNpilot_cont_300_bf_scaffold_164_curated_23
unknown

Not on your lists

comp(26308..27705)
DNA (1398bp) protein (466aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_164_curated_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28103..28816)
DNA (714bp) protein (238aa)
Response regulator receiver n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLX7_MESCW
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADV10362.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_300_bf_scaffold_164_curated_25
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28922..30919
DNA (1998bp) protein (666aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
ATP-binding region ATPase domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLX6_MESCW
ATPase domain-containing protein
SCNpilot_cont_300_bf_scaffold_164_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30947..31621)
DNA (675bp) protein (225aa)
Transcriptional regulator, GntR family n=1 Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1QYM5_CHRSD
Transcriptional regulator {ECO:0000313|EMBL:EYR82629.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_164_curated_27
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31746..32513
DNA (768bp) protein (256aa)
UPI0003CDF070 related cluster n=1 Tax=unknown RepID=UPI0003CDF070
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDX32822.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_cont_300_bf_scaffold_164_curated_28

Not on your lists

32525..33733
DNA (1209bp) protein (403aa)
N-acylglucosamine 2-epimerase/GlcNAc 2-epimerase n=1 Tax=uncultured organism RepID=T1W7L8_9ZZZZ
N-acylglucosamine 2-epimerase/GlcNAc 2-epimerase {ECO:0000313|EMBL:AGU10691.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
N-acylglucosamine 2-epimerase
SCNpilot_cont_300_bf_scaffold_164_curated_29
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

33730..34869
DNA (1140bp) protein (380aa)
galactonate dehydratase (EC:4.2.1.6)
Galactonate dehydratase {ECO:0000313|EMBL:CCW36577.1}; EC=4.2.1.6 {ECO:0000313|EMBL:CCW36577.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI000380B9F1
SCNpilot_cont_300_bf_scaffold_164_curated_30
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34871..35659
DNA (789bp) protein (263aa)
ABC transporter n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W758_9ACTO
ABC transporter
ABC transporter {ECO:0000313|EMBL:AGZ45033.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Displaying items 1-30 of 356 in total

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