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SCNpilot_cont_300_bf_scaffold_158_curated

Search features with annotation key words

Displaying items 1-30 of 317 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_158_curated_1

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comp(1..192)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8W1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98117.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
SCNpilot_cont_300_bf_scaffold_158_curated_2

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comp(308..1636)
DNA (1329bp) protein (443aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8W0_9BACT
Putative sugar uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:ACF98116.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_158_curated_3

Not on your lists

1893..2543
DNA (651bp) protein (217aa)
Putative transcriptional regulator GntR family protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8V9_9BACT
Putative transcriptional regulator GntR family protein {ECO:0000313|EMBL:ACF98115.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_158_curated_4
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2558..3082
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SH07_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB75000.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_300_bf_scaffold_158_curated_5

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3207..4010
DNA (804bp) protein (268aa)
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8V8_9BACT
ABC transporter related protein {ECO:0000313|EMBL:ACF98114.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
SCNpilot_cont_300_bf_scaffold_158_curated_6
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4063..5112
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3CD77
regulatory protein IclR
Regulatory protein IclR {ECO:0000313|EMBL:ADV83535.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_cont_300_bf_scaffold_158_curated_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5383..6372
DNA (990bp) protein (330aa)
UPI0003CF12A6 related cluster n=1 Tax=unknown RepID=UPI0003CF12A6
inner-membrane translocator; K10440 ribose transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADB48996.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_300_bf_scaffold_158_curated_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6369..7364
DNA (996bp) protein (332aa)
hypothetical protein, partial n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3961A
inner-membrane translocator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_cont_300_bf_scaffold_158_curated_9
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7416..8609
DNA (1194bp) protein (398aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GF07_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP96384.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
mandelate racemase/muconate lactonizing-like protein
SCNpilot_cont_300_bf_scaffold_158_curated_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8743..9531
DNA (789bp) protein (263aa)
Transcriptional regulator, IclR family n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WU21_KYRT2
Uncharacterized protein {ECO:0000313|EMBL:KKB81512.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_158_curated_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9722..10033
DNA (312bp) protein (104aa)
L-rhamnose 1-epimerase; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
L-rhamnose 1-epimerase n=1 Tax=Bacillus nealsonii AAU1 RepID=R9CDJ8_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KKC35254.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_cont_300_bf_scaffold_158_curated_12
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10049..10957
DNA (909bp) protein (303aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGS3_9RHOB
Dihydrodipicolinate synthase {ECO:0000313|EMBL:EAR51862.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_cont_300_bf_scaffold_158_curated_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10959..11990
DNA (1032bp) protein (344aa)
pld3; pyridoxal4-dehydrogenase Pld (EC:1.1.1.107)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CA57B
D-threo-aldose 1-dehydrogenase {ECO:0000313|EMBL:EWY42598.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_cont_300_bf_scaffold_158_curated_14
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12011..12907)
DNA (897bp) protein (299aa)
Lipase, class 3 n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21LV2_SACD2
galactose-1-phosphate uridyl transferase, class I
Lipase, class 3 {ECO:0000313|EMBL:ABD80327.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024).;"
SCNpilot_cont_300_bf_scaffold_158_curated_15
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12962..13096)
DNA (135bp) protein (45aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036A88B6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52311.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_158_curated_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13113..14261)
DNA (1149bp) protein (383aa)
cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037EE771
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:KKB86569.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_300_bf_scaffold_158_curated_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14273..15847)
DNA (1575bp) protein (525aa)
cytochrome d ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase subunit I n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7L2_PELHB
Cytochrome d terminal oxidase subunit 1 {ECO:0000313|EMBL:KFL31121.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_cont_300_bf_scaffold_158_curated_18
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16002..17738
DNA (1737bp) protein (579aa)
ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydD n=1 Tax=Achromobacter piechaudii HLE RepID=J4YHQ6_9BURK
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKC41402.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
cydD; ATP-binding protein; K16013 ATP-binding cassette, subfamily C, bacterial CydD
SCNpilot_cont_300_bf_scaffold_158_curated_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17735..19402
DNA (1668bp) protein (556aa)
Transport ATP-binding protein CydC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7L5_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB86571.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
transport ATP-binding protein CydC; K16012 ATP-binding cassette, subfamily C, bacterial CydC
SCNpilot_cont_300_bf_scaffold_158_curated_20
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19389..19859
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DB53_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EDQ32448.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_158_curated_21
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19870..20592)
DNA (723bp) protein (241aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7L6_PELHB
CarD family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEQ52317.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_158_curated_22
unknown

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comp(20655..20777)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_158_curated_23
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20901..21389)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77819.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_158_curated_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21725..22339
DNA (615bp) protein (205aa)
ABC transporter n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GYJ7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFL25104.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative ABC transporter, ATPase component
SCNpilot_cont_300_bf_scaffold_158_curated_25
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22339..24885
DNA (2547bp) protein (849aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSY1_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KKC41466.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_158_curated_26
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24957..26186)
DNA (1230bp) protein (410aa)
Oxalate/formate antiporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGC2_PELHB
Membrane protein {ECO:0000313|EMBL:KKB77448.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Oxalate/formate antiporter
SCNpilot_cont_300_bf_scaffold_158_curated_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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26370..26852
DNA (483bp) protein (161aa)
Transcriptional regulator, HxlR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D348_9RHIZ
HxlR family transcriptional regulator {ECO:0000313|EMBL:GAK45798.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_158_curated_28
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26840..27532)
DNA (693bp) protein (231aa)
UPI0003D01EDC related cluster n=1 Tax=unknown RepID=UPI0003D01EDC
Uncharacterized protein {ECO:0000313|EMBL:ESY99594.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_158_curated_29
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27809..29107)
DNA (1299bp) protein (433aa)
Putative L-sorbosone dehydrogenase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UMP2_SINMW
putative L-sorbosone dehydrogenase
Putative L-sorbosone dehydrogenase {ECO:0000313|EMBL:ABR64922.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_300_bf_scaffold_158_curated_30
Ciona savignyi, Ciona, Enterogona, Ascidiacea, Chordata, Metazoa

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comp(29217..29882)
DNA (666bp) protein (222aa)
Uncharacterized protein (Fragment) n=1 Tax=Ciona savignyi RepID=H2ZHX7_CIOSA
Uncharacterized protein {ECO:0000313|Ensembl:ENSCSAVP00000017193}; TaxID=51511 species="Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona.;" source="Ciona savignyi (Pacific transparent sea squirt).;"
similar to fukutin
Displaying items 1-30 of 317 in total

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