ggKbase home page

SCNpilot_cont_300_bf_scaffold_836_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_836_curated_1

Not on your lists

comp(2..205)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8W1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98117.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
SCNpilot_cont_300_bf_scaffold_836_curated_2

Not on your lists

comp(373..1593)
DNA (1221bp) protein (407aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8W0_9BACT
Putative sugar uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:ACF98116.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_836_curated_3
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1884..2657
DNA (774bp) protein (258aa)
UPI0003CEE7D2 related cluster n=1 Tax=unknown RepID=UPI0003CEE7D2
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ53828.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
gntr domain protein
SCNpilot_cont_300_bf_scaffold_836_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2829..4409
DNA (1581bp) protein (527aa)
von Willebrand factor type A n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZN80_RHILW
von Willebrand factor type A; K07114 uncharacterized protein
von Willebrand factor type A {ECO:0000313|EMBL:ACI54870.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_300_bf_scaffold_836_curated_5
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4409..5026
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WDE1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ21399.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5026..6132
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000363169D
Uncharacterized protein {ECO:0000313|EMBL:AJC79169.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6336..7610
DNA (1275bp) protein (425aa)
Integrase family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UH95_METS4
Integrase {ECO:0000313|EMBL:KKC34608.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
integrase family protein
SCNpilot_cont_300_bf_scaffold_836_curated_8
unknown

Not on your lists

7607..8593
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_9
unknown

Not on your lists

8662..8847
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036FF503
SCNpilot_cont_300_bf_scaffold_836_curated_10
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9114..9482
DNA (369bp) protein (123aa)
Uncharacterized protein n=189 Tax=Brucella RepID=G4PFJ9_BRUML
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEY29255.1}; TaxID=520489 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis bv. 5 str. 513.;"
SCNpilot_cont_300_bf_scaffold_836_curated_11
unknown

Not on your lists

9653..9754
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_12
unknown

Not on your lists

9751..9957
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_13
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9954..11390
DNA (1437bp) protein (479aa)
Replicative DNA helicase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HS76_9RHIZ
Replicative DNA helicase {ECO:0000313|EMBL:EJN04261.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
replicative DNA helicase
SCNpilot_cont_300_bf_scaffold_836_curated_14
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11394..12374
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2D1T1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK83554.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_15
unknown

Not on your lists

12549..12737
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12743..13948
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A610E
Flagellar protein FlgJ {ECO:0000313|EMBL:KEC75475.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13955..15748
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YP63_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25755.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_836_curated_18
unknown

Not on your lists

comp(15754..16101)
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_19
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16136..18217
DNA (2082bp) protein (694aa)
VanW family protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8L0_CELFA
VanW family protein
VanW family protein {ECO:0000313|EMBL:AEE47018.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_300_bf_scaffold_836_curated_20
unknown

Not on your lists

18231..18593
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_21
unknown

Not on your lists

18590..18844
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18848..19174
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MAS5_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP24918.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_300_bf_scaffold_836_curated_23

Not on your lists

comp(19621..20073)
DNA (453bp) protein (151aa)
Putative phage-associated protein n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UF10_CYAP2
Uncharacterized protein {ECO:0000313|EMBL:KKM60716.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative phage-associated protein
SCNpilot_cont_300_bf_scaffold_836_curated_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20593..22593
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R957_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53052.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_25
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22873..23763)
DNA (891bp) protein (297aa)
Putative transcriptional regulator n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L4K6_AGRSH
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ADY64457.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_300_bf_scaffold_836_curated_26
unknown

Not on your lists

24321..24818
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_836_curated_27
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24840..25454
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035DEB74
Uncharacterized protein {ECO:0000313|EMBL:ESW79632.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SH3 type 3 domain-containing protein
SCNpilot_cont_300_bf_scaffold_836_curated_28
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25762..26340)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E2D4DB
Uncharacterized protein {ECO:0000313|EMBL:KKC39489.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_836_curated_29
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26585..27076
DNA (492bp) protein (164aa)
Putative small heat shock protein IbpA n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZD5_9PROT
Putative small heat shock protein IbpA {ECO:0000313|EMBL:EHM01659.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
small heat shock protein
SCNpilot_cont_300_bf_scaffold_836_curated_30
unknown

Not on your lists

27655..27852
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying items 1-30 of 39 in total

View Taxonomy