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SCNpilot_expt_1000_bf_scaffold_638_curated

Search features with annotation key words

Displaying items 31-60 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_638_curated_31
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(29579..30916)
DNA (1338bp) protein (446aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FC86_PAEMK
ABC transporter substrate-binding protein; K10232 alpha-glucoside transport system substrate-binding protein
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
SCNpilot_expt_1000_bf_scaffold_638_curated_32
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31449..32183
DNA (735bp) protein (245aa)
LacI family transcription regulator n=1 Tax=Streptomyces chartreusis RepID=UPI000262E348
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EZP29412.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_638_curated_33
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32295..33359
DNA (1065bp) protein (355aa)
NADH-dependent dehydrogenase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VEL1_9BACT
NADH-dependent dehydrogenase {ECO:0000313|EMBL:EPR68655.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_638_curated_34
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33595..34905
DNA (1311bp) protein (437aa)
sugar-binding protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI000371EA14
Sugar-binding protein {ECO:0000313|EMBL:KKB11713.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC-type sugar transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_638_curated_35
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35035..36057
DNA (1023bp) protein (341aa)
sugar ABC transporter permease n=1 Tax=Leucothrix mucor RepID=UPI0003B63EE7
Sugar-ABC transporter {ECO:0000313|EMBL:KFC66915.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_638_curated_36
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36057..36935
DNA (879bp) protein (293aa)
Binding-protein-dependent transporter inner membrane component n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J3C1_9RHOB
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB11715.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_638_curated_37
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36949..37947
DNA (999bp) protein (333aa)
glycosyl hydrolase family 32 protein; K01193 beta-fructofuranosidase [EC:3.2.1.26]
Levansucrase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGA4_9RHOB
Levansucrase {ECO:0000313|EMBL:KKB11716.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_38
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38953..39252)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00035EB95A
Uncharacterized protein {ECO:0000313|EMBL:BAQ16686.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_638_curated_39
unknown

Not on your lists

comp(39430..39786)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_638_curated_40
Rhodococcus sp. Chr-9, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39838..40791)
DNA (954bp) protein (318aa)
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LXW5_ACIFD
Endonuclease {ECO:0000313|EMBL:KHJ74245.1}; TaxID=713612 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. Chr-9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_638_curated_41
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40906..41145
DNA (240bp) protein (80aa)
DNA-binding protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X2W7_9BRAD
DNA-binding protein {ECO:0000313|EMBL:EAQ33424.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_638_curated_42
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(41213..42256)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003729265
Strain A contig00090, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ53655.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_638_curated_43
unknown

Not on your lists

42432..43715
DNA (1284bp) protein (428aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_638_curated_44
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

Not on your lists

43750..45132
DNA (1383bp) protein (461aa)
Extracellular solute-binding protein family 1 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D1L8_HALOH
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
SCNpilot_expt_1000_bf_scaffold_638_curated_45
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45197..46096
DNA (900bp) protein (300aa)
Putative sugar ABC transporter, permease protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CW16_MYXXD
sugar ABC transporter permease
Putative sugar ABC transporter, permease protein {ECO:0000313|EMBL:ABF88896.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_46
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

46093..46950
DNA (858bp) protein (286aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CI09_THET1
binding-protein-dependent transporters inner membrane component; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ43380.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_47
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

47171..48064
DNA (894bp) protein (298aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium sp. CF080 RepID=J2II95_9RHIZ
ABC transporter substrate binding protein (amino acid); K02030 polar amino acid transport system substrate-binding protein
Tax=BJP_08E140C01_Actinomycetales_70_11
SCNpilot_expt_1000_bf_scaffold_638_curated_48
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48084..48944
DNA (861bp) protein (287aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JKU2_RHILV
Amino acid ABC transporter permease {ECO:0000313|EMBL:EWY40046.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_638_curated_49
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

48950..49720
DNA (771bp) protein (257aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ATP-binding protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E2X9_9ACTN
ATP-binding protein {ECO:0000313|EMBL:EHN11965.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_50
GWE2_CPR3_35_7, CPR3, Bacteria

Not on your lists

49735..50841
DNA (1107bp) protein (369aa)
Pyoverdine/dityrosine biosynthesis protein id=4268646 bin=GWF2_CPR3_35_18 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_CPR3_35_18 organism_group=CPR3
Pyoverdine/dityrosine biosynthesis protein {ECO:0000313|EMBL:KKP85946.1}; TaxID=1618349 species="Bacteria; candidate division CPR3.;" source="candidate division CPR3 bacterium GW2011_GWE2_35_7.;"
pvcA; siderophore biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_638_curated_51
GWE2_CPR3_35_7, CPR3, Bacteria

Not on your lists

50838..51710
DNA (873bp) protein (291aa)
ROK family glucokinase; K00845 glucokinase [EC:2.7.1.2]
Transcriptional regulator/sugar kinase id=1972574 bin=GWE2_CPR3_35_7 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:KKP85947.1}; TaxID=1618349 species="Bacteria; candidate division CPR3.;" source="candidate division CPR3 bacterium GW2011_GWE2_35_7.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_52
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

51707..52531
DNA (825bp) protein (275aa)
GntR domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F5G1_CONWI
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ADB50628.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_53
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

52668..53432
DNA (765bp) protein (255aa)
Glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZGV1_ANACC
Tax=CG_Anaero_02
SCNpilot_expt_1000_bf_scaffold_638_curated_54
bacterium UASB14, Bacteria

Not on your lists

53822..55576
DNA (1755bp) protein (585aa)
Putative ABC transporter substrate binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7J1_CALAS
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:GAK54075.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
putative ABC transporter substrate binding protein
SCNpilot_expt_1000_bf_scaffold_638_curated_55
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

55652..56662
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000375FD11
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Oligopeptide ABC transporter, permease protein {ECO:0000313|EMBL:ACM04698.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_56
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

56659..57519
DNA (861bp) protein (287aa)
Maltose ABC transporter, permease n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L2Q8_THERP
maltose ABC transporter permease; K02034 peptide/nickel transport system permease protein
Maltose ABC transporter, permease {ECO:0000313|EMBL:ACM05736.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_57
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

57516..58472
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000377E1C3
ABC transporter; K02031 peptide/nickel transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADB50926.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_58
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

58474..59460
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036006C1
oligopeptide transport ATP-binding protein OppF; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide transport ATP-binding protein appF {ECO:0000313|EMBL:ACM06162.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_59
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

59500..60327
DNA (828bp) protein (276aa)
iron-sulfur cluster assembly protein HesB n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5E737
xylose isomerase domain-containing protein
Tax=CG_Arma_01
SCNpilot_expt_1000_bf_scaffold_638_curated_60
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

60370..61221
DNA (852bp) protein (284aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK05_SINAD
sugar phosphate isomerase/epimerase
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:AGA29168.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 31-60 of 64 in total

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