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SCNpilot_expt_1000_bf_scaffold_638_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_638_curated_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..612)
DNA (612bp) protein (204aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Phosphonate ABC transporter, ATPase subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U2B7_9RHIZ
phnC; phosphonate ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_638_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(714..1166)
DNA (453bp) protein (151aa)
moaE; molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdopterin synthase catalytic subunit n=2 Tax=Rhodobacter sphaeroides RepID=MOAE_RHOS4
Molybdenum cofactor biosynthesis protein MoaE {ECO:0000313|EMBL:KFL26733.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_3
unknown

Not on your lists

comp(1177..1563)
DNA (387bp) protein (129aa)
Cytochrome c class I n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAR9_9BRAD
Cytochrome c2 {ECO:0000313|EMBL:CPR15986.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome C550,cytochrome C550; K08738 cytochrome c
SCNpilot_expt_1000_bf_scaffold_638_curated_4
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1573..2832)
DNA (1260bp) protein (420aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003172C87
Molybdopterin biosynthesis enzyme {ECO:0000313|EMBL:EIG62867.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2878..5343)
DNA (2466bp) protein (822aa)
arsenate reductase (azurin) (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Arsenite oxidase large subunit n=1 Tax=Oceanibaculum indicum P24 RepID=K2K0P8_9PROT
Arsenite oxidase large subunit {ECO:0000313|EMBL:EKE76334.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5355..5876)
DNA (522bp) protein (174aa)
twin-arginine translocation pathway signal; K08355 arsenite oxidase small subunit [EC:1.20.9.1]
arsenite oxidase small subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035CDD3B
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABE65010.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_7
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6001..7341)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000382B419
two component sigma54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABS69172.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_8
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7331..8779)
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative sensor histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036DBA1C
SCNpilot_expt_1000_bf_scaffold_638_curated_9
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8776..9411)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EK32_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV04580.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
phosphate/phosphonate ABC transporter; K02044 phosphonate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_638_curated_10
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9762..10781
DNA (1020bp) protein (340aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
molybdenum cofactor biosynthesis protein MoeA n=1 Tax=Kaistia granuli RepID=UPI000363F504
moaA; radical SAM protein; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_638_curated_11
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10774..11307
DNA (534bp) protein (178aa)
molybdenum cofactor biosynthesis protein; K03831 molybdopterin adenylyltransferase [EC:2.7.7.75]
Molybdenum cofactor synthesis domain-containing protein n=2 Tax=Ochrobactrum intermedium RepID=C4WPM4_9RHIZ
Molybdenum cofactor synthesis domain-containing protein {ECO:0000313|EMBL:EEQ93455.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
SCNpilot_expt_1000_bf_scaffold_638_curated_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11287..11976)
DNA (690bp) protein (230aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBR8_XANP2
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS65461.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_13
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12234..13271
DNA (1038bp) protein (346aa)
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RPP5_9RHIZ
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:ESR27254.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_638_curated_14
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13331..14707
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000365574F
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:ESR27253.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_638_curated_15
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14715..15995
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036C7806
Phosphate transport system permease protein PstA {ECO:0000313|EMBL:ESR27252.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_638_curated_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16034..16843
DNA (810bp) protein (270aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
pstB; phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate ABC transporter, ATPase subunit n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IY87_POLGS
SCNpilot_expt_1000_bf_scaffold_638_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16862..17560
DNA (699bp) protein (233aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R6_PELHB
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphate transport system regulatory protein PhoU; K02039 phosphate transport system protein
SCNpilot_expt_1000_bf_scaffold_638_curated_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17572..18273
DNA (702bp) protein (234aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R7_PELHB
Chemotaxis protein CheY {ECO:0000313|EMBL:KKB13079.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphate regulon transcriptional regulatory protein PhoB (SphR); K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
SCNpilot_expt_1000_bf_scaffold_638_curated_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18692..19222
DNA (531bp) protein (177aa)
Putative arsenate reductase arsC-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX80_POLGS
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:KFC70679.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
arsenate reductase
SCNpilot_expt_1000_bf_scaffold_638_curated_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19222..19890
DNA (669bp) protein (223aa)
Major intrinsic protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAX6_9RHIZ
MIP family channel protein {ECO:0000313|EMBL:KKC33607.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transport transmembrane protein (aquaporin-like)
SCNpilot_expt_1000_bf_scaffold_638_curated_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19887..20318
DNA (432bp) protein (144aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HU46_9RHIZ
SCNpilot_expt_1000_bf_scaffold_638_curated_22
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20366..20707
DNA (342bp) protein (114aa)
UPI0003D05CBE related cluster n=2 Tax=unknown RepID=UPI0003D05CBE
ArsR family transcriptional regulator {ECO:0000313|EMBL:ESZ24626.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_638_curated_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20760..22178
DNA (1419bp) protein (473aa)
Putative secreted protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IME9_XANP2
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:ABS69192.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_638_curated_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22188..23399
DNA (1212bp) protein (404aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUS4_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:EHK55510.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_638_curated_25
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23814..24584
DNA (771bp) protein (257aa)
Integrase family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T837_ACIDE
Integrase family protein {ECO:0000313|EMBL:EHL20867.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_638_curated_26
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25058..25405
DNA (348bp) protein (116aa)
UPI0003CE63D4 related cluster n=1 Tax=unknown RepID=UPI0003CE63D4
Uncharacterized protein {ECO:0000313|EMBL:ESX91268.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_638_curated_27
unknown

Not on your lists

25972..26178
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_638_curated_28
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26297..27304)
DNA (1008bp) protein (336aa)
Putative oxidoreductase n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z889_9RHOB
Putative oxidoreductase {ECO:0000313|EMBL:GAD57675.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
SCNpilot_expt_1000_bf_scaffold_638_curated_29
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(27314..28417)
DNA (1104bp) protein (368aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Paenibacillus mucilaginosus 3016 RepID=H6NNS3_9BACL
binding-protein-dependent transport system inner membrane component; K10234 alpha-glucoside transport system permease protein
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
SCNpilot_expt_1000_bf_scaffold_638_curated_30
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(28414..29445)
DNA (1032bp) protein (344aa)
ABC transporter n=1 Tax=Paenibacillus sp. HW567 RepID=UPI00036BF067
binding-protein-dependent transport system inner membrane protein; K10233 alpha-glucoside transport system permease protein
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
Displaying items 1-30 of 64 in total

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