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SCNpilot_expt_1000_bf_scaffold_163_curated

Search features with annotation key words

Displaying items 1-30 of 183 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_163_curated_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111..917
DNA (807bp) protein (269aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQ26_METSB
Uncharacterized protein {ECO:0000313|EMBL:KKC31863.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_163_curated_2
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(921..1433)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGA1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGF83256.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_163_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1655..2560)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP3_PELHB
Mll5186 protein {ECO:0000313|EMBL:CDP53598.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_163_curated_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2573..2662)
DNA (90bp) protein (30aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSG4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB06920.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_163_curated_5
unknown

Not on your lists

2830..4008
DNA (1179bp) protein (393aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_163_curated_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4013..4711
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69748.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_163_curated_7
unknown

Not on your lists

4759..5181
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_163_curated_8
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5243..6241)
DNA (999bp) protein (333aa)
Pyrimidine ABC transporter, periplasmic pyrimidine-binding protein n=6 Tax=Rhodobacter capsulatus RepID=D5AMH5_RHOCB
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJY47718.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
pyrimidine ABC transporter periplasmic pyrimidine-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_163_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6265..7377)
DNA (1113bp) protein (371aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=alpha proteobacterium BAL199 RepID=A8TU04_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKB13293.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_163_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7374..8297)
DNA (924bp) protein (308aa)
Nitrate/sulfonate ABC transporter permease n=1 Tax=Rhizobium sp. Pop5 RepID=K0W202_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KFL27861.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
nitrate/sulfonate ABC transporter, permease; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_163_curated_11
unknown

Not on your lists

comp(8294..8521)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_163_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8521..9102)
DNA (582bp) protein (194aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2H703_9RHIZ
Sulfonate ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB76409.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_163_curated_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9311..10759)
DNA (1449bp) protein (483aa)
phenylhydantoinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2] rbh
D-hydantoinase n=1 Tax=Rhizobium sp. CF122 RepID=J2RWL0_9RHIZ
Dihydropyrimidinase {ECO:0000313|EMBL:KKB10678.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_163_curated_14
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10824..12074)
DNA (1251bp) protein (417aa)
N-carbamoyl-beta-alanine amidohydrolase protein {ECO:0000313|EMBL:CDX29735.1}; EC=3.5.1.6 {ECO:0000313|EMBL:CDX29735.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
allantoate amidohydrolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003723D68
amidase
SCNpilot_expt_1000_bf_scaffold_163_curated_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12084..12452)
DNA (369bp) protein (123aa)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDP52171.1}; EC=1.2.1.27 {ECO:0000313|EMBL:CDP52171.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
malonate/methylmalonate semialdehyde dehydrogenase MmsA (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Aldehyde dehydrogenase, putative malonate/methylmalonate semialdehyde dehydrogenase MmsA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J759_HYPSM
SCNpilot_expt_1000_bf_scaffold_163_curated_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12461..13570)
DNA (1110bp) protein (370aa)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDP52171.1}; EC=1.2.1.27 {ECO:0000313|EMBL:CDP52171.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H1_PELHB
SCNpilot_expt_1000_bf_scaffold_163_curated_17
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13570..14901)
DNA (1332bp) protein (444aa)
Omega amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:KKB76358.1}; EC=2.6.1.18 {ECO:0000313|EMBL:KKB76358.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
omega amino acid--pyruvate aminotransferase protein (EC:2.6.1.18)
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Rhizobium sp. RepID=L0NGX3_RHISP
SCNpilot_expt_1000_bf_scaffold_163_curated_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15069..15704
DNA (636bp) protein (212aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTN8_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB08021.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcriptional regulator RutR of pyrimidine catabolism (TetR family); K09017 TetR/AcrR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_163_curated_19
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15725..16198)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCF5_9CAUL
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_expt_1000_bf_scaffold_163_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16302..17201)
DNA (900bp) protein (300aa)
Membrane protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4I7_9RHIZ
Integral membrane protein {ECO:0000313|EMBL:CDP52167.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_163_curated_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17198..17563)
DNA (366bp) protein (122aa)
DoxX family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTP2_9RHIZ
Putative DoxD family transmembrane protein {ECO:0000313|EMBL:KFC61378.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_163_curated_22
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17623..18654)
DNA (1032bp) protein (344aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GKW4_9CAUL
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAN00334.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
bhpP; diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
SCNpilot_expt_1000_bf_scaffold_163_curated_23
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18718..20040)
DNA (1323bp) protein (441aa)
Dihydropyrimidine dehydrogenase {ECO:0000313|EMBL:KFL27872.1}; EC=1.3.1.1 {ECO:0000313|EMBL:KFL27872.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
dihydropyrimidine dehydrogenase (EC:1.3.1.1); K00207 dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] rbh
Probable oxidoreductase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98K45_RHILO
SCNpilot_expt_1000_bf_scaffold_163_curated_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20052..21395)
DNA (1344bp) protein (448aa)
NADPH-dependent glutamate synthase beta chain-like oxidoreductase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KK51_MESAW
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KFC61380.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NADPH-dependent glutamate synthase beta chain-like oxidoreductase
SCNpilot_expt_1000_bf_scaffold_163_curated_25
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21777..22142
DNA (366bp) protein (122aa)
Putative rare lipoprotein A n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YDN6_MOBAS
Lipoprotein {ECO:0000313|EMBL:KFL27874.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
lipoprotein A domain-containing protein; K03642 rare lipoprotein A
SCNpilot_expt_1000_bf_scaffold_163_curated_26
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22218..24041)
DNA (1824bp) protein (608aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; TaxID=1283301 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
Putative Cellulase 1 n=1 Tax=Streptomyces afghaniensis 772 RepID=S4N9I1_9ACTO
glycoside hydrolase family protein
SCNpilot_expt_1000_bf_scaffold_163_curated_27
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24092..25882)
DNA (1791bp) protein (597aa)
ade3; Adenine deaminase (EC:3.5.4.2)
Adenine deaminase 3 {ECO:0000255|HAMAP-Rule:MF_01518}; Short=Adenase 3 {ECO:0000255|HAMAP-Rule:MF_01518};; Short=Adenine aminase 3 {ECO:0000255|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000255|HAMAP-Rule:MF_01518};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
Adenine deaminase 3 n=3 Tax=Rhizobium meliloti RepID=ADEC3_RHIME rbh
SCNpilot_expt_1000_bf_scaffold_163_curated_28
unknown

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comp(26533..26703)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_163_curated_29
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26837..27709
DNA (873bp) protein (291aa)
UPI0003D01F54 related cluster n=1 Tax=unknown RepID=UPI0003D01F54
Uncharacterized protein {ECO:0000313|EMBL:ESZ21482.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_163_curated_30
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27825..28331
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76367.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Displaying items 1-30 of 183 in total

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