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SCNpilot_expt_1000_bf_scaffold_362_curated

Search features with annotation key words

Displaying items 91-120 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_362_curated_91
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69935..70774
DNA (840bp) protein (280aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE52_PELHB
SCNpilot_expt_1000_bf_scaffold_362_curated_92
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70771..71496
DNA (726bp) protein (242aa)
DNA repair protein radc n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNV7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB10366.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_362_curated_93
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71498..72295)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. pectinolytica 34mel RepID=T0PIU9_AERSA
Contig_66, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ78450.1}; TaxID=1588629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. L_1B5_3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_94
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72309..73562)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE54_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28700.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_95
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73669..74406)
DNA (738bp) protein (246aa)
Cytochrome c-type biogenesis protein CcdA (DsbD-like protein) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE55_PELHB
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KKC36644.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
cytochrome c-type biogenesis protein CcdA (DsbD-like protein); K06196 cytochrome c-type biogenesis protein
SCNpilot_expt_1000_bf_scaffold_362_curated_96
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

74516..75037
DNA (522bp) protein (174aa)
PadR family transcriptional regulator n=1 Tax=Salinispora pacifica RepID=UPI000364CC7E
SPG23_c4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS28984.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
PadR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_362_curated_97
BJP_IG2157_Actinomycetales_63_19, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

75034..75717
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein n=1 Tax=Salinispora pacifica RepID=UPI00038266E8
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
Tax=BJP_IG2157_Actinomycetales_63_19
SCNpilot_expt_1000_bf_scaffold_362_curated_98
Arthrobacter sp. FB24, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

75714..77858
DNA (2145bp) protein (715aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI0003795EA0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK01924.1}; TaxID=290399 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. (strain FB24).;"
SCNpilot_expt_1000_bf_scaffold_362_curated_99
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77948..78628
DNA (681bp) protein (227aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE57_PELHB
SCNpilot_expt_1000_bf_scaffold_362_curated_100
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78630..79952
DNA (1323bp) protein (441aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE58_PELHB
SCNpilot_expt_1000_bf_scaffold_362_curated_101
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79949..80359
DNA (411bp) protein (137aa)
GCN5-related N-acetyltransferase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YB36_MESOW
Uncharacterized protein {ECO:0000313|EMBL:KKB10488.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GCN5-like N-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_362_curated_102
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80356..80913
DNA (558bp) protein (186aa)
Putative esterase of the alpha/beta hydrolase fold protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE59_PELHB
Alpha/beta hydrolase {ECO:0000313|EMBL:KFL28705.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative esterase of the alpha/beta hydrolase fold protein; K07002
SCNpilot_expt_1000_bf_scaffold_362_curated_103
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81055..82032)
DNA (978bp) protein (326aa)
Lipase/esterase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SHH8_9SPHN
lipase/esterase
Lipase/esterase {ECO:0000313|EMBL:AGH50037.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_104
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82040..82513)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB08529.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_105
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82555..83106)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641312
Lipoprotein-related protein {ECO:0000313|EMBL:KFC67683.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_106
unknown

Not on your lists

comp(83103..83285)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_107
unknown

Not on your lists

83436..83588
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_108
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83669..83992)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWB0_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KFL28706.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_109
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84245..85009
DNA (765bp) protein (255aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE65_PELHB
SCNpilot_expt_1000_bf_scaffold_362_curated_110
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85181..86236
DNA (1056bp) protein (352aa)
agmatine deiminase; K10536 agmatine deiminase [EC:3.5.3.12]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036DD5CD
Peptidylarginine deiminase {ECO:0000313|EMBL:KGB56376.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_111
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86333..86572
DNA (240bp) protein (80aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp
phosphoribosylformylglycinamidine synthase subunit PurS; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
phosphoribosylformylglycinamidine synthase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037609B6
SCNpilot_expt_1000_bf_scaffold_362_curated_112
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86580..87497)
DNA (918bp) protein (306aa)
Flagellar motor rotation protein MotB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB12596.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
flagellar motor rotation protein MotB; K02557 chemotaxis protein MotB
SCNpilot_expt_1000_bf_scaffold_362_curated_113
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87508..88371)
DNA (864bp) protein (288aa)
Flagellar motor rotation protein MotA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q0_PELHB
Flagellar motor protein MotA {ECO:0000313|EMBL:KKB86583.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
flagellar motor rotation protein MotA; K02556 chemotaxis protein MotA
SCNpilot_expt_1000_bf_scaffold_362_curated_114
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

88664..89920
DNA (1257bp) protein (419aa)
Glycosyltransferase, MGT family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TUD0_9CHLR
Glycosyltransferase, MGT family {ECO:0000313|EMBL:EFH85227.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_362_curated_115
unknown

Not on your lists

90030..90119
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_116
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90231..91310
DNA (1080bp) protein (360aa)
Putative membrane protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJZ7_MESAW
Mll2248 protein {ECO:0000313|EMBL:CDP50436.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_117
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91318..91953)
DNA (636bp) protein (212aa)
Putative LysE-type translocator n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZDG5_ROSLO
Threonine transporter {ECO:0000313|EMBL:KKB84922.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
LysE-type translocator
SCNpilot_expt_1000_bf_scaffold_362_curated_118
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92037..92702
DNA (666bp) protein (222aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=1228055 species
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 n=5 Tax=Rhizobium meliloti RepID=F6BWI0_SINMB
SCNpilot_expt_1000_bf_scaffold_362_curated_119
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92707..93510)
DNA (804bp) protein (268aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XJZ6_HIRBI
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ACT59441.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
SCNpilot_expt_1000_bf_scaffold_362_curated_120
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93639..94304
DNA (666bp) protein (222aa)
Integral membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE69_PELHB
Integral membrane protein {ECO:0000313|EMBL:CDP50434.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
Displaying items 91-120 of 165 in total

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