ggKbase home page

SCNpilot_expt_1000_bf_scaffold_362_curated

Search features with annotation key words

Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_362_curated_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..703
DNA (702bp) protein (234aa)
Helicase domain-containing protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KC88_METEX
Uncharacterized protein {ECO:0000313|EMBL:KFL24947.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

693..1631
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B0S2_METEA
Uncharacterized protein {ECO:0000313|EMBL:EXL08623.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein; K06919 putative DNA primase/helicase
SCNpilot_expt_1000_bf_scaffold_362_curated_3
unknown

Not on your lists

1678..2181
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_4
unknown

Not on your lists

2411..2578
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_5
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2581..3900
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B9G6_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL72160.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_362_curated_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..5663
DNA (1764bp) protein (588aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP52356.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_7
unknown

Not on your lists

5664..6260
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6245..8053
DNA (1809bp) protein (603aa)
Phage-related protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYC6_AGRVS
hypothetical protein
Phage-related protein {ECO:0000313|EMBL:ACM37156.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_362_curated_9
unknown

Not on your lists

8067..8657
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8654..9400
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00037B9AD1
Uncharacterized protein {ECO:0000313|EMBL:EUB95578.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9397..10017
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BY20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95578.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10528..11748
DNA (1221bp) protein (407aa)
Uncharacterized protein {ECO:0000313|EMBL:ETR74714.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_13
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11858..12094
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DNH7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK84512.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_14
unknown

Not on your lists

comp(12091..12471)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_15
unknown

Not on your lists

comp(12648..13067)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13136..13942)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AA73_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE94664.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_362_curated_17
unknown

Not on your lists

comp(14009..14389)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_362_curated_18
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14508..14747
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J8Z8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL65602.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_362_curated_19
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14744..15115
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GMT5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP98772.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
thermonuclease, putative
SCNpilot_expt_1000_bf_scaffold_362_curated_20
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15330..16400)
DNA (1071bp) protein (357aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZI7_SPHCR
Putative GAF sensor diguanylate cyclase {ECO:0000313|EMBL:KFG91775.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
GAF sensor-containing diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_362_curated_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16506..17321
DNA (816bp) protein (272aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG2_PELHB
SCNpilot_expt_1000_bf_scaffold_362_curated_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17330..18160
DNA (831bp) protein (277aa)
Polyhydroxyalkanoate depolymerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC42_9BACT
Polyhydroxyalkanoate depolymerase {ECO:0000313|EMBL:EEF62510.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
polyhydroxyalkanoate depolymerase precursor rbh
SCNpilot_expt_1000_bf_scaffold_362_curated_23
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18293..19756
DNA (1464bp) protein (488aa)
UPI0003CFD73E related cluster n=1 Tax=unknown RepID=UPI0003CFD73E
Uncharacterized protein {ECO:0000313|EMBL:KFA93791.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_362_curated_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19753..20961)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82369.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_25
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21047..22147)
DNA (1101bp) protein (367aa)
Flagellar protein FlgJ (Peptidoglycan hydrolase) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG4_PELHB
Flagellar protein FlgJ (Peptidoglycan hydrolase) {ECO:0000313|EMBL:KFC62702.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
flagellar protein FlgJ
SCNpilot_expt_1000_bf_scaffold_362_curated_26
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22205..22783)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG5_PELHB
NAD(P)H nitroreductase {ECO:0000313|EMBL:KKB79191.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_27
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22952..23842
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDG6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53905.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_362_curated_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23921..25336
DNA (1416bp) protein (472aa)
Putative adenylate cyclase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFU6_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KFL32884.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
adenylate cyclase rbh
SCNpilot_expt_1000_bf_scaffold_362_curated_29

Not on your lists

25418..25696
DNA (279bp) protein (93aa)
Putative adenylate cyclase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFU6_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KKN89011.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_362_curated_30
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25851..26066
DNA (216bp) protein (72aa)
Type IV pilus assembly PilZ n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HFW4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB11159.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Displaying items 1-30 of 165 in total

View Taxonomy