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SCNpilot_expt_1000_bf_scaffold_472_curated

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_472_curated_1
unknown

Not on your lists

comp(72..221)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_2
unknown

Not on your lists

839..1006
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_3
unknown

Not on your lists

comp(996..1124)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1452..2462)
DNA (1011bp) protein (337aa)
LacI family transcriptional regulator (EC:5.1.1.1); K02529 LacI family transcriptional regulator
Uncharacterized protein n=1 Tax=Glaciecola chathamensis S18K6 RepID=K6XB14_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KKB82575.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_472_curated_5
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2646..3959
DNA (1314bp) protein (438aa)
sugar-binding protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B73A02
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAB14981.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
putative sugar ABC transporter, substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_472_curated_6
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4035..4919
DNA (885bp) protein (295aa)
sugar ABC transporter permease n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B532EF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE74344.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCNpilot_expt_1000_bf_scaffold_472_curated_7
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4916..5797
DNA (882bp) protein (294aa)
ABC transporter permease protein YurM n=1 Tax=Arthrobacter sp. SJCon RepID=L8TMF5_9MICC
SPG23_c9, whole genome shotgun sequence {ECO:0000313|EMBL:KIS28656.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
ABC-type sugar transport system, permease component
SCNpilot_expt_1000_bf_scaffold_472_curated_8
Exophiala spinifera, Exophiala, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

Not on your lists

5820..7295
DNA (1476bp) protein (492aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMU0_9CLOT
Strain CBS 89968 unplaced genomic scaffold supercont1.3, whole genome shotgun sequence {ECO:0000313|EMBL:KIW16956.1}; TaxID=91928 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Exophiala.;" source="Exophiala spinifera.;"
Beta-fructosidases (levanase/invertase)
SCNpilot_expt_1000_bf_scaffold_472_curated_9
Vibrio sp. EJY3, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7292..8209
DNA (918bp) protein (306aa)
Glycosyl hydrolase family 32 domain-containing protein; K01212 levanase [EC:3.2.1.65]
Glycosyl hydrolase family 32 domain-containing protein n=1 Tax=Vibrio sp. EJY3 RepID=H2IN24_9VIBR
Glycosyl hydrolase family 32 domain-containing protein {ECO:0000313|EMBL:AEX24700.1}; TaxID=1116375 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. (strain EJY3).;"
SCNpilot_expt_1000_bf_scaffold_472_curated_10
unknown

Not on your lists

8225..8632
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10355..11377
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P094_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40731.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_472_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11462..12334
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000364B888
ABC transporter permease {ECO:0000313|EMBL:KKB85277.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative binding-protein-dependent transport protein
SCNpilot_expt_1000_bf_scaffold_472_curated_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12331..13416
DNA (1086bp) protein (362aa)
glycine/betaine ABC transporter n=1 Tax=Kaistia granuli RepID=UPI00037419AD
Glycine/betaine ABC transporter {ECO:0000313|EMBL:KKB85276.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative glycine betaine ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_472_curated_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13409..14326
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003035357
Universal stress protein UspA {ECO:0000313|EMBL:KKB86146.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
UspA domain-containing protein
SCNpilot_expt_1000_bf_scaffold_472_curated_15
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14336..15190
DNA (855bp) protein (285aa)
Methyltransferase type 12 n=1 Tax=Frankia sp. EUN1f RepID=D3CUE6_9ACTO
Methyltransferase type 12 {ECO:0000313|EMBL:EFC85676.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_472_curated_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15332..15775
DNA (444bp) protein (148aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00035C7831
Transcriptional regulator (Modular protein) {ECO:0000313|EMBL:CDX11845.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_472_curated_17
unknown

Not on your lists

comp(16939..17085)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17082..17465)
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUP8_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03993.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_472_curated_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17614..18669
DNA (1056bp) protein (352aa)
L-lysine 2,3-aminomutase; K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036236F8
Lysine 2,3-aminomutase {ECO:0000313|EMBL:KGM34749.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_472_curated_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18690..19421)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:KKB11948.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_472_curated_21
Raoultella ornithinolytica, Raoultella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19418..20830)
DNA (1413bp) protein (471aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=54291 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Raoultella.;" source="Raoultella ornithinolytica (Klebsiella ornithinolytica).;"
L-arabinose isomerase n=1 Tax=Raoultella ornithinolytica B6 RepID=M9WC15_RAOOR
L-arabinose isomerase
SCNpilot_expt_1000_bf_scaffold_472_curated_22
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20956..21720
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase n=1 Tax=Burkholderia sp. YI23 RepID=G8MB93_9BURK
short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:AET91360.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_expt_1000_bf_scaffold_472_curated_23
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21717..22601
DNA (885bp) protein (295aa)
amidohydrolase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00035ED91E
Amidohydrolase {ECO:0000313|EMBL:AJK48782.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
hypothetical protein; K07046
SCNpilot_expt_1000_bf_scaffold_472_curated_24
Clavispora lusitaniae, Clavispora, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

22605..23783
DNA (1179bp) protein (393aa)
Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae (strain ATCC 42720) RepID=C4Y308_CLAL4 rbh
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEQ38796.1}; TaxID=306902 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Metschnikowiaceae; Clavispora.;" source="Clavispora lusitaniae (strain ATCC 42720) (Yeast) (Candida; lusitaniae).;"
SCNpilot_expt_1000_bf_scaffold_472_curated_25
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23894..24472
DNA (579bp) protein (193aa)
Phosphonate ABC transporter, permease protein PhnE n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HA26_RHIRD
Phosphonate ABC transporter permease {ECO:0000313|EMBL:KKC34580.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
phnE1; phosphonate ABC transporter transmembrane protein; K02042 phosphonate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_472_curated_26
unknown

Not on your lists

24524..24733
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_27
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24739..25656)
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP8_PELHB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEQ53689.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_472_curated_28
unknown

Not on your lists

comp(25752..26222)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_472_curated_29
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26459..27493
DNA (1035bp) protein (345aa)
L-glyceraldehyde 3-phosphate reductase n=2 Tax=Labrenzia RepID=U7GJ21_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB10859.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_472_curated_30
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27477..28724)
DNA (1248bp) protein (416aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34957.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
Displaying items 1-30 of 150 in total

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