ggKbase home page

SCNpilot_expt_1000_bf_scaffold_145_curated

Search features with annotation key words

Displaying items 1-30 of 246 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_145_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1253
DNA (1251bp) protein (417aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
integral membrane sensor signal transduction histidine kinase; K10125 two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036D9B89
SCNpilot_expt_1000_bf_scaffold_145_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1246..2565
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304E6D5
Fis family transcriptional regulator {ECO:0000313|EMBL:KKB83644.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
two component sigma-54 specific Fis family transcriptional regulator; K10126 two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
SCNpilot_expt_1000_bf_scaffold_145_curated_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2896..4329)
DNA (1434bp) protein (478aa)
Signal transduction histidine kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76798.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_145_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4356..5792)
DNA (1437bp) protein (479aa)
Mercuric ion reductase {ECO:0000313|EMBL:CDP51561.1}; EC=1.16.1.1 {ECO:0000313|EMBL:CDP51561.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00520 mercuric reductase [EC:1.16.1.1]
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4N5_RHOVT
SCNpilot_expt_1000_bf_scaffold_145_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6090..6224
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEH8_9RHOB
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
SCNpilot_expt_1000_bf_scaffold_145_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6238..6612
DNA (375bp) protein (125aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE5_PELHB
SCNpilot_expt_1000_bf_scaffold_145_curated_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6609..8456
DNA (1848bp) protein (616aa)
Membrane protein insertase YidC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE4_PELHB
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
inner membrane protein translocase component YidC, long form; K03217 preprotein translocase subunit YidC
SCNpilot_expt_1000_bf_scaffold_145_curated_8
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8458..9147
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KEP67913.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
SCNpilot_expt_1000_bf_scaffold_145_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9172..9804
DNA (633bp) protein (211aa)
Probable GTP-binding protein EngB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGE3_PELHB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GTP-binding protein EngB; K03978 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_145_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9801..10508)
DNA (708bp) protein (236aa)
GMP synthase family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGR6_9BRAD
Glutamine amidotransferase, class I {ECO:0000313|EMBL:CDP53317.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
glutamine amidotransferase
SCNpilot_expt_1000_bf_scaffold_145_curated_11
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10570..10743)
DNA (174bp) protein (58aa)
UPF0391 membrane protein SHLA_721c00010 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT79_9RHIZ
hypothetical protein
UPF0391 membrane protein LPU83_3696 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_expt_1000_bf_scaffold_145_curated_12
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10809..11318)
DNA (510bp) protein (170aa)
msrB; methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase msrB n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RRD4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFL25777.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_145_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11418..11972)
DNA (555bp) protein (185aa)
UPI0003CF13BD related cluster n=1 Tax=unknown RepID=UPI0003CF13BD
Secreted and surface protein containing fasciclin-like repeats {ECO:0000313|EMBL:CDP53319.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
beta-Ig-H3/fasciclin
SCNpilot_expt_1000_bf_scaffold_145_curated_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12308..13015)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD9_PELHB
Putative anti-sigmaE protein {ECO:0000313|EMBL:KFC70592.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_145_curated_15
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13012..13557)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI0003743173
RNA polymerase sigma factor {ECO:0000313|EMBL:KKB81710.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_145_curated_16
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13670..16123
DNA (2454bp) protein (818aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003808427
Wenxma_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70549.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
TIR protein
SCNpilot_expt_1000_bf_scaffold_145_curated_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16206..17117
DNA (912bp) protein (304aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD7_PELHB
SCNpilot_expt_1000_bf_scaffold_145_curated_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17118..17606)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B87DB
Uncharacterized protein {ECO:0000313|EMBL:KFL25773.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_145_curated_19
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17646..18875
DNA (1230bp) protein (410aa)
Putative monooxygenase FAD-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTN6_RHITR
Monooxygenase, FAD-binding protein {ECO:0000313|EMBL:CDP53324.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative monooxygenase FAD-binding protein
SCNpilot_expt_1000_bf_scaffold_145_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18877..20379)
DNA (1503bp) protein (501aa)
Transmembrane efflux protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y5H9_PARAH
Uncharacterized protein {ECO:0000313|EMBL:CDP53326.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transmembrane efflux protein
SCNpilot_expt_1000_bf_scaffold_145_curated_21
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20383..21012)
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z0H8_PARAH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGT10971.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_145_curated_22
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21293..22258)
DNA (966bp) protein (322aa)
Mannonate dehydratase {ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|SAAS:SAAS00189414};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003828691
SCNpilot_expt_1000_bf_scaffold_145_curated_23
unknown

Not on your lists

22365..22565
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_145_curated_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22555..23310
DNA (756bp) protein (252aa)
Phosphoglycolate phosphatase-like protein, clustered with acetylglutamate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD6_PELHB
HAD family hydrolase {ECO:0000313|EMBL:KKB75914.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
phosphoglycolate phosphatase-like protein, clustered with acetylglutamate kinase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_1000_bf_scaffold_145_curated_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23317..24174)
DNA (858bp) protein (286aa)
Decarboxylase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD4_PELHB
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:KKB13197.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
decarboxylase; K06966
SCNpilot_expt_1000_bf_scaffold_145_curated_26
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24267..25169
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJM7_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKB13196.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_145_curated_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25177..26022
DNA (846bp) protein (282aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G183_9RHIZ
SCNpilot_expt_1000_bf_scaffold_145_curated_28
unknown

Not on your lists

26138..26659
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_145_curated_29
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26755..27240
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBZ3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL24816.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_145_curated_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27256..28416
DNA (1161bp) protein (387aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
N-succinyl-L,L-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGD2_PELHB
Displaying items 1-30 of 246 in total

View Taxonomy