ggKbase home page

SCNpilot_expt_1000_bf_scaffold_490_curated

Search features with annotation key words

Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_490_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124..630)
DNA (507bp) protein (169aa)
ISSpo8, transposase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4Y0_STAND
ISSpo8, transposase
ISSpo8, transposase {ECO:0000313|EMBL:ADH88028.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_490_curated_2
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

911..1549
DNA (639bp) protein (213aa)
Two component transcriptional regulator, LuxR family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB81488.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_490_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..2486
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003798CF6
AraC family transcriptional regulator {ECO:0000313|EMBL:KFL26720.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
AraC family transcriptional regulator; K13652 AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_490_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2486..2908
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003692182
Uncharacterized protein {ECO:0000313|EMBL:KFL26721.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_490_curated_5
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2992..3612
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Cyanothece RepID=B1WV04_CYAA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB52201.1}; TaxID=43989 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
SCNpilot_expt_1000_bf_scaffold_490_curated_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3634..4458)
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8X4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKC33991.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_490_curated_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4475..5755)
DNA (1281bp) protein (427aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
5-aminolevulinate synthase; K00643 5-aminolevulinate synthase [EC:2.3.1.37]
5-aminolevulinate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L3_PELHB
SCNpilot_expt_1000_bf_scaffold_490_curated_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5958..7160
DNA (1203bp) protein (401aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76681.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_9
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7287..8606
DNA (1320bp) protein (440aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76681.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8686..9459
DNA (774bp) protein (258aa)
Predicted L-arabinose 1-dehydrogenase {ECO:0000313|EMBL:CDP51262.1}; EC=1.1.1.46 {ECO:0000313|EMBL:CDP51262.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLM5_9RHIZ
putative short-chain dehydrogenase/reductase
SCNpilot_expt_1000_bf_scaffold_490_curated_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9559..10227
DNA (669bp) protein (223aa)
Outer membrane lipoprotein omp16 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L4_PELHB
Cell envelope biogenesis protein OmpA {ECO:0000313|EMBL:KFL30939.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
outer membrane lipoprotein omp16 precursor
SCNpilot_expt_1000_bf_scaffold_490_curated_12
unknown

Not on your lists

10354..10653
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_490_curated_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10671..10943)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB76678.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_14
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11012..11683)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RES1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB81483.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_490_curated_15
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12082..12603
DNA (522bp) protein (174aa)
Two component transcriptional regulator n=1 Tax=Mycobacterium phlei RIVM601174 RepID=I0RGJ4_MYCPH
Two component transcriptional regulator {ECO:0000313|EMBL:EID10247.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_490_curated_16
Mycobacterium vanbaalenii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12600..13790
DNA (1191bp) protein (397aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=350058 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TBS1_MYCVP
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_490_curated_17
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13846..14316
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VSE1_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ39732.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_18
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14313..15785
DNA (1473bp) protein (491aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F146_VERMA
peptidoglycan-binding domain 1 protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:AEB42700.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_expt_1000_bf_scaffold_490_curated_19
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15782..16465
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F145_VERMA
hypothetical protein; K02003 putative ABC transport system ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEB42699.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_expt_1000_bf_scaffold_490_curated_20
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16462..17664
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RGZ3_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP70342.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
ABC transporter; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_490_curated_21

Not on your lists

comp(17977..18324)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL87836.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_22
unknown

Not on your lists

comp(18462..18704)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_490_curated_23
unknown

Not on your lists

comp(18697..18978)
DNA (282bp) protein (94aa)
Uncharacterized protein id=2514732 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
cyclic nucleotide-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_490_curated_24
unknown

Not on your lists

comp(19154..19342)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_490_curated_25
unknown

Not on your lists

comp(19371..19883)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_490_curated_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19889..20554)
DNA (666bp) protein (222aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAU0_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EDS11200.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_490_curated_27

Not on your lists

comp(20661..22631)
DNA (1971bp) protein (657aa)
bacteriophage-type DNA polymerase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
XRE family transcriptional regulator n=1 Tax=Candidatus Hamiltonella defensa RepID=UPI0003134726
Uncharacterized protein {ECO:0000313|EMBL:KKM85724.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_28
unknown

Not on your lists

comp(22600..22944)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_490_curated_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22948..23541)
DNA (594bp) protein (198aa)
Uncharacterized protein {ECO:0000313|EMBL:AHX16127.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_1000_bf_scaffold_490_curated_30
unknown

Not on your lists

comp(23519..23815)
DNA (297bp) protein (99aa)

This feature has no annotations

Displaying items 1-30 of 137 in total

View Taxonomy