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SCNpilot_expt_1000_bf_scaffold_293_curated

Search features with annotation key words

Displaying items 121-150 of 163 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_293_curated_121
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135279..136178
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPK0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06971.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_293_curated_122
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

136171..137091
DNA (921bp) protein (307aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
UPI0003D0137A related cluster n=1 Tax=unknown RepID=UPI0003D0137A
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KIJ72627.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_123
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137088..138065
DNA (978bp) protein (326aa)
Aldo/keto reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI2_PELHB
Aldo/keto reductase {ECO:0000313|EMBL:KKB79502.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_293_curated_124
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138145..138513
DNA (369bp) protein (123aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9W6_PELHB
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEQ52493.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_125
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138510..139391
DNA (882bp) protein (294aa)
ABC transporter ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9W7_PELHB
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AEQ52494.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_126
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139394..140143
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9W8_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52495.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_127
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140241..143159
DNA (2919bp) protein (973aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB
Peptidase M16 {ECO:0000313|EMBL:KFL26101.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
peptidase M16C associated domain protein; K06972
SCNpilot_expt_1000_bf_scaffold_293_curated_128
unknown

Not on your lists

143178..144086
DNA (909bp) protein (303aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_293_curated_129
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144156..145874
DNA (1719bp) protein (573aa)
long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77146.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_130
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145861..146259
DNA (399bp) protein (133aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
MerR family transcriptional regulator {ECO:0000313|EMBL:KFL26095.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
SCNpilot_expt_1000_bf_scaffold_293_curated_131
bacterium YEK0313, Bacteria

Not on your lists

comp(146219..148432)
DNA (2214bp) protein (738aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA10_PELHB
Oxygen sensor protein DosP {ECO:0000313|EMBL:CEJ14052.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCNpilot_expt_1000_bf_scaffold_293_curated_132
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148602..148856)
DNA (255bp) protein (85aa)
UvrB/UvrC protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4S6_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:CDP52870.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
UvrB/UvrC protein
SCNpilot_expt_1000_bf_scaffold_293_curated_133
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148856..150433)
DNA (1578bp) protein (526aa)
ATP-dependent DNA ligase LigC; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB
ATP-dependent DNA ligase {ECO:0000313|EMBL:KFL26099.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_134
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150430..151428)
DNA (999bp) protein (333aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB
mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
mRNA 3-end processing factor {ECO:0000313|EMBL:AEQ53137.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_135
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152387..154882
DNA (2496bp) protein (832aa)
butyryl-CoA dehydrogenase; K06445 acyl-CoA dehydrogenase [EC:1.3.99.-]
Butyryl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA07_PELHB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL26093.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_136
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154894..156864
DNA (1971bp) protein (657aa)
alpha-subunit of fatty acid oxidation complex; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
Alpha-subunit of fatty acid oxidation complex n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA06_PELHB
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL26092.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_137
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156866..158149
DNA (1284bp) protein (428aa)
3-ketoacyl-CoA thiolase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA05_PELHB
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KFC69772.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_138
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158452..160071
DNA (1620bp) protein (540aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Ruegeria conchae RepID=UPI000237A964
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB79513.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
oppA; periplasmic oligopeptide-binding protein; K15580 oligopeptide transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_293_curated_139
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160159..161082
DNA (924bp) protein (308aa)
Putative oligopeptide ABC transporter, permease protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V1C8_9RHOB
Oligopeptide transporter permease {ECO:0000313|EMBL:KKB79514.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
oligopeptide transport system permease OppB; K15581 oligopeptide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_293_curated_140
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161092..162027
DNA (936bp) protein (312aa)
peptide ABC transporter permease n=1 Tax=Loktanella vestfoldensis RepID=UPI000379CEDC
Peptide ABC transporter permease {ECO:0000313|EMBL:KKC41018.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
oppC; oligopeptide transport system permease OppC; K15582 oligopeptide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_293_curated_141
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162027..163010
DNA (984bp) protein (328aa)
Oligopeptide transport ATP-binding protein OppD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA01_PELHB
oligopeptide transport ATP-binding protein OppD; K15583 oligopeptide transport system ATP-binding protein
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:AEQ52528.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_142
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

163007..164023
DNA (1017bp) protein (339aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA00_PELHB
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL26086.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
oligopeptide transport ATP-binding protein OppF; K10823 oligopeptide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_293_curated_143
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164026..164520)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035F0AFF
Uncharacterized protein {ECO:0000313|EMBL:KKB10957.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
chemotaxis protein CheY
SCNpilot_expt_1000_bf_scaffold_293_curated_144
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164709..164834
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Z8_PELHB
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
SCNpilot_expt_1000_bf_scaffold_293_curated_145
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164981..165382
DNA (402bp) protein (134aa)
polyketide cyclase n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002F36DB6
Uncharacterized protein {ECO:0000313|EMBL:KFL26083.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_293_curated_146
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165455..166849)
DNA (1395bp) protein (465aa)
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-related deacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32637.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-related deacylase
SCNpilot_expt_1000_bf_scaffold_293_curated_147
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167147..168547
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003805659
Wenxma_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69785.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_293_curated_148
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

168681..170642
DNA (1962bp) protein (654aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00035CDB3B
Wenxma_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69786.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_293_curated_149
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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170858..175327
DNA (4470bp) protein (1490aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ML54_9RHIZ
hypothetical protein rbh
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_1000_bf_scaffold_293_curated_150
Streptomyces gancidicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(175363..175977)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI0003669868
Uncharacterized protein {ECO:0000313|EMBL:EMF29417.1}; TaxID=1284664 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces gancidicus BKS 13-15.;"
hypothetical protein
Displaying items 121-150 of 163 in total

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