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SCNpilot_expt_1000_bf_scaffold_293_curated

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Displaying items 1-30 of 163 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_293_curated_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227..1393)
DNA (1167bp) protein (389aa)
Putative chromate transport protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B6M4_PSEAC
Chromate transporter {ECO:0000313|EMBL:KFL25347.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transporter
SCNpilot_expt_1000_bf_scaffold_293_curated_2
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1489..2061
DNA (573bp) protein (191aa)
TetR family transcriptional regulator n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EM48_9RHOB
HTH-type transcriptional regulator BetI {ECO:0000313|EMBL:KJL24832.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_293_curated_3
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2058..3230
DNA (1173bp) protein (391aa)
Monooxygenase, FAD-binding n=2 Tax=Saccharopolyspora erythraea RepID=A4FAH1_SACEN
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KHD96552.1}; TaxID=136273 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
FAD-binding monooxygenase
SCNpilot_expt_1000_bf_scaffold_293_curated_4
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3298..4149)
DNA (852bp) protein (284aa)
Ureidoglycolate lyase n=1 Tax=Halomonas sp. HAL1 RepID=G4F4Q8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKB79478.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
2,4-diketo-3-deoxy-L-fuconate hydrolase
SCNpilot_expt_1000_bf_scaffold_293_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4229..4660)
DNA (432bp) protein (144aa)
RbsD/FucU transport protein family; K02431 L-fucose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003660126
Fucose operon fucU protein {ECO:0000313|EMBL:CDP51012.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4667..5410)
DNA (744bp) protein (248aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCW6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11806.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_293_curated_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5479..7029
DNA (1551bp) protein (517aa)
galactarate dehydratase; K01685 altronate hydrolase [EC:4.2.1.7]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A941A
Galactarate dehydratase {ECO:0000313|EMBL:KKB76950.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7032..8069
DNA (1038bp) protein (346aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0CFX8_RHILT
Dehydratase {ECO:0000313|EMBL:KGM31988.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_293_curated_9
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..8341
DNA (276bp) protein (92aa)
acyP; acylphosphatase (EC:3.6.1.7); K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase {ECO:0000313|EMBL:CCG07899.1}; EC=3.6.1.7 {ECO:0000313|EMBL:CCG07899.1};; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
Acylphosphatase n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SSM0_RHOPH
SCNpilot_expt_1000_bf_scaffold_293_curated_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8639..9079
DNA (441bp) protein (147aa)
Nucleoside diphosphate kinase regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QIU4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB76853.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
nucleoside diphosphate kinase regulator; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_293_curated_11
unknown

Not on your lists

9231..9446
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_293_curated_12
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9549..11021
DNA (1473bp) protein (491aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AJY46191.1}; EC=1.2.1.16 {ECO:0000313|EMBL:AJY46191.1};; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
succinic semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
succinate-semialdehyde dehdyrogenase n=1 Tax=Rhizobium meliloti RepID=UPI00036D9A88
SCNpilot_expt_1000_bf_scaffold_293_curated_13
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11123..11512)
DNA (390bp) protein (130aa)
Nuclear protein SET n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L5G5_SAPGL
nuclear protein SET; K07117
Nuclear protein SET {ECO:0000313|EMBL:EKN67589.1}; TaxID=1117379 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus bataviensis LMG 21833.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_14
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11574..11990)
DNA (417bp) protein (139aa)
Transcriptional regulator, MerR family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB2_METPP
copG; MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABM94601.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_293_curated_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12076..14700
DNA (2625bp) protein (875aa)
Lead, cadmium, zinc and mercury transporting ATPas e {ECO:0000313|EMBL:CDP50995.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CDP50995.1};; EC=3.6.3.4 {ECO:0000313|EMBL:CDP50995.1};; EC=3.6.3.5 {ECO:0000313|EMBL:CDP50995.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Potassium-transporting ATPase B chain n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4V0_9RHIZ
heavy metal efflux P-type ATPase
SCNpilot_expt_1000_bf_scaffold_293_curated_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14690..15118)
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11828.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15272..16444
DNA (1173bp) protein (391aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:CDP50997.1}; EC=1.1.2.3 {ECO:0000313|EMBL:CDP50997.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V189_9RHIZ
SCNpilot_expt_1000_bf_scaffold_293_curated_18
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16451..16765)
DNA (315bp) protein (105aa)
UPI0003CEAD9B related cluster n=1 Tax=unknown RepID=UPI0003CEAD9B
XRE family transcriptional regulator {ECO:0000313|EMBL:ESY76151.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_293_curated_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16762..17085)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14446.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_293_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17124..17939)
DNA (816bp) protein (272aa)
Putative transmembrane anti-sigma factor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M4F0_9RHIZ
Transmembrane regulator protein PrtR {ECO:0000313|EMBL:CDP50998.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative transmembrane anti-sigma factor
SCNpilot_expt_1000_bf_scaffold_293_curated_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17936..18445)
DNA (510bp) protein (170aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7E6_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:KKB85670.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_293_curated_22
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18481..18879)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PIJ4_9RHIZ
Lipoprotein {ECO:0000313|EMBL:KKB85671.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_293_curated_23
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19038..20123
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF83_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53073.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
TRAP transporter solute receptor
SCNpilot_expt_1000_bf_scaffold_293_curated_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20184..21575)
DNA (1392bp) protein (464aa)
C4 dicarboxylate transporter permease n=1 Tax=Nitratireductor indicus C115 RepID=K2N4Y3_9RHIZ
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KKB85689.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_1000_bf_scaffold_293_curated_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21572..22060)
DNA (489bp) protein (163aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Nitratireductor indicus C115 RepID=K2PN02_9RHIZ
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KKB12437.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_expt_1000_bf_scaffold_293_curated_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22271..23221
DNA (951bp) protein (317aa)
Fructokinase {ECO:0000313|EMBL:CDP51001.1}; EC=2.7.1.4 {ECO:0000313|EMBL:CDP51001.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
fructokinase; K00847 fructokinase [EC:2.7.1.4]
Fructokinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCW1_PELHB
SCNpilot_expt_1000_bf_scaffold_293_curated_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23389..24273
DNA (885bp) protein (295aa)
gluconate 2-dehydrogenase (acceptor) (EC:1.1.99.3)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035F9B0A
Uncharacterized protein {ECO:0000313|EMBL:KKB07540.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_293_curated_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24335..24976
DNA (642bp) protein (214aa)
Keto-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:KFL26141.1}; EC=4.1.2.14 {ECO:0000313|EMBL:KFL26141.1};; EC=4.1.3.16 {ECO:0000313|EMBL:KFL26141.1};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
4-hydroxy-2-ketovalerate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV3_PELHB
SCNpilot_expt_1000_bf_scaffold_293_curated_29
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24976..25347
DNA (372bp) protein (124aa)
DNA-binding domain of ModE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV4_PELHB
ModE family transcriptional regulator {ECO:0000313|EMBL:KKB79463.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
DNA-binding domain of ModE; K02019 molybdate transport system regulatory protein
SCNpilot_expt_1000_bf_scaffold_293_curated_30
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25415..26152
DNA (738bp) protein (246aa)
Molybdate ABC transporter substrate-binding protein n=1 Tax=Rhodobacter capsulatus YW1 RepID=V8H6D1_RHOCA
Molybdate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKC34259.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
modA1; molybdenum ABC transporter periplasmic molybdenum-binding protein ModA; K02020 molybdate transport system substrate-binding protein
Displaying items 1-30 of 163 in total

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