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SCNpilot_expt_1000_bf_scaffold_2742_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2742_curated_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..768)
DNA (768bp) protein (256aa)
Cation diffusion facilitator family transporter n=4 Tax=Ochrobactrum RepID=C4WNJ0_9RHIZ
Cation transporter {ECO:0000313|EMBL:KKB78720.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
histidine-rich transporter transmembrane protein
SCNpilot_expt_1000_bf_scaffold_2742_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(802..1080)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLL2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM24854.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2742_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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1392..2066
DNA (675bp) protein (225aa)
Putative ATPase, ParA type n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1W2_POLGS
ParA type ATPase; K03496 chromosome partitioning protein
Putative ATPase, ParA type {ECO:0000313|EMBL:ADZ72023.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_2742_curated_4
unknown

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2023..2286
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2742_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2624..3346
DNA (723bp) protein (241aa)
Replication protein A n=2 Tax=Rhizobium radiobacter RepID=B9JQR1_AGRRK
Strain MEJ076 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIP99956.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
repA; replication protein A
SCNpilot_expt_1000_bf_scaffold_2742_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3691..3975
DNA (285bp) protein (95aa)
Plasmid maintenance system killer n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRH4_9RHIZ
Plasmid maintenance system killer {ECO:0000313|EMBL:EHK56668.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
plasmid maintenance system killer; K07334 proteic killer suppression protein
SCNpilot_expt_1000_bf_scaffold_2742_curated_7
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3975..4286
DNA (312bp) protein (104aa)
Addiction module antidote protein, HigA family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTK6_9RHIZ
Addiction module antidote protein, HigA family {ECO:0000313|EMBL:EJN05446.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
XRE family plasmid maintenance system antidote protein
SCNpilot_expt_1000_bf_scaffold_2742_curated_8
unknown

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comp(4363..4809)
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2742_curated_9
unknown

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comp(4812..5459)
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2742_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5463..7094)
DNA (1632bp) protein (544aa)
Type IV secretory pathway VirD4 components n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8W9_9SPHN
type IV secretory pathway VirD4 components
TRAG family protein {ECO:0000313|EMBL:AEW02342.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_2742_curated_11
unknown

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7429..7785
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2742_curated_12
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7757..9073
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000376E7FC
Uncharacterized protein {ECO:0000313|EMBL:KCZ53738.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
relaxase/mobilization nuclease domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2742_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9111..9350)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000378422D
Putative cation efflux transporter
Putative cation efflux transporter {ECO:0000313|EMBL:AGK56895.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Displaying 13 items

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