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SCNpilot_expt_1000_bf_scaffold_605_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_605_curated_1
unknown

Not on your lists

30..1070
DNA (1041bp) protein (347aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_605_curated_2
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2040..4883
DNA (2844bp) protein (948aa)
Terminase GpA n=1 Tax=Yersinia enterocolitica subsp. enterocolitica WA-314 RepID=K1B566_YEREN
Phage terminase large subunit family protein {ECO:0000313|EMBL:AIO46108.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
terminase GpA
SCNpilot_expt_1000_bf_scaffold_605_curated_3
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5339..6298)
DNA (960bp) protein (320aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQ50_MESAW
sugar phosphate isomerase/epimerase
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:AGB47562.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6695..7528
DNA (834bp) protein (278aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3Q4D1_RHIE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGE56351.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_605_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7539..8360
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TI04_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK52392.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8415..9785)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQF1_BRAJP
Type III effector {ECO:0000313|EMBL:KGT78557.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9785..11035)
DNA (1251bp) protein (417aa)
RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose-bisphosphate carboxylase {ECO:0000313|EMBL:ADH90931.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ADH90931.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Ribulose-bisphosphate carboxylase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAR4_STAND
SCNpilot_expt_1000_bf_scaffold_605_curated_8
Jannaschia sp. CCS1, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11032..12072)
DNA (1041bp) protein (347aa)
Oxidoreductase-like protein n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28MT3_JANSC
oxidoreductase-like protein
Oxidoreductase-like protein {ECO:0000313|EMBL:ABD55979.1}; TaxID=290400 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia sp. (strain CCS1).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_9
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12069..13973)
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28MT4_JANSC
Uncharacterized protein {ECO:0000313|EMBL:KHJ56429.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_10
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14136..14909
DNA (774bp) protein (258aa)
Transcriptional regulator NanR n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QIW5_9RHOB
Transcriptional regulator NanR {ECO:0000313|EMBL:EPX79508.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
transcriptional regulator NanR
SCNpilot_expt_1000_bf_scaffold_605_curated_11
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14917..16197)
DNA (1281bp) protein (427aa)
beta-glucosidase n=1 Tax=Paenibacillus peoriae RepID=UPI00026C59DE
Beta-glucosidase {ECO:0000313|EMBL:AIY08545.1}; TaxID=1406 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (Bacillus polymyxa).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_12
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16258..17130)
DNA (873bp) protein (291aa)
ABC transporter, permease protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7FA01_9ACTO
Inner membrane ABC transporter permease protein YcjP {ECO:0000313|EMBL:KJL26841.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ABC transporter inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_605_curated_13
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17145..18020)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI000370119A
Lactose transport system permease protein LacF {ECO:0000313|EMBL:KJL26842.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ABC transporter inner membrane protein; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_605_curated_14
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18102..19346)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003625BE5
Multiple sugar-binding protein {ECO:0000313|EMBL:KJL26843.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_605_curated_15
Achromobacter sp. WM111, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19492..21321)
DNA (1830bp) protein (610aa)
Carbofuran hydrolase n=7 Tax=root RepID=Q9KJV0_9BURK
Carbofuran hydrolase {ECO:0000313|EMBL:AAF80385.1}; TaxID=104199 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. WM111.;"
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_605_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21680..22708)
DNA (1029bp) protein (343aa)
Transcriptional regulator, LacI family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B991_RHILS
transcriptional regulator, LacI family; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACS60479.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22764..24812)
DNA (2049bp) protein (683aa)
beta-galactosidase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F1658
Beta-galactosidase {ECO:0000313|EMBL:EJC64376.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_18
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25364..25663)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00035EB95A
Uncharacterized protein {ECO:0000313|EMBL:BAQ16686.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_19
unknown

Not on your lists

comp(25850..26038)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_605_curated_20
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26133..26414
DNA (282bp) protein (94aa)
Transposase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZR13_9SPHN
Transposase {ECO:0000313|EMBL:EJL21254.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
transposase IS116/IS110/IS902 family protein
SCNpilot_expt_1000_bf_scaffold_605_curated_21
Rhodococcus sp. Chr-9, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26969..27589)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LXW5_ACIFD
Endonuclease {ECO:0000313|EMBL:KHJ74245.1}; TaxID=713612 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. Chr-9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_605_curated_22
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28064..28804)
DNA (741bp) protein (247aa)
Putative dehydrogenase/reductase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YIT9_MOBAS
Putative dehydrogenase/reductase {ECO:0000313|EMBL:EAS50028.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
short-chain dehydrogenase/reductase
SCNpilot_expt_1000_bf_scaffold_605_curated_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28862..29638)
DNA (777bp) protein (259aa)
UPI0003D5E369 related cluster n=1 Tax=unknown RepID=UPI0003D5E369
ABC transporter related
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:AHC44991.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
SCNpilot_expt_1000_bf_scaffold_605_curated_24
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29635..30294)
DNA (660bp) protein (220aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNS4_VEREI
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ABM59281.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_25
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30291..30956)
DNA (666bp) protein (222aa)
ABC transporter, permease protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X6T0_9BURK
ABC transporter, permease protein {ECO:0000313|EMBL:EFF77447.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
transcriptional regulator, Fis family
SCNpilot_expt_1000_bf_scaffold_605_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31023..31865)
DNA (843bp) protein (281aa)
Extracellular solute-binding protein family 3 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMY5_VARPS
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ACS19497.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_605_curated_27
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32173..33609
DNA (1437bp) protein (479aa)
LacI family transcription regulator n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627EE9
LacI family transcriptional regulator {ECO:0000313|EMBL:KIC50924.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. ANG-S1.;"
LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_605_curated_28
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33634..34602
DNA (969bp) protein (323aa)
D-3-phosphoglycerate dehydrogenase (Pgdh) {ECO:0000313|EMBL:EEE09010.1}; EC=1.1.1.95 {ECO:0000313|EMBL:EEE09010.1};; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase (Pgdh) n=2 Tax=Burkholderia multivorans RepID=B9BHE7_9BURK
SCNpilot_expt_1000_bf_scaffold_605_curated_29
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34783..35565
DNA (783bp) protein (261aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
HpcH/HpaI aldolase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V764_9BRAD
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:KJK20524.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_605_curated_30
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35558..36529
DNA (972bp) protein (324aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EYD76677.1}; EC=1.2.1.3 {ECO:0000313|EMBL:EYD76677.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein n=3 Tax=Acidiphilium RepID=A5G0Z0_ACICJ
D-isomer specific 2-hydroxyacid dehydrogenase
Displaying items 1-30 of 40 in total

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