ggKbase home page

SCNpilot_expt_1000_bf_scaffold_363_curated_8

Organism: scnpilot_dereplicated_Devosia_2

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(5575..6654)

Top 3 Functional Annotations

Value Algorithm Source
Probable DNA repair protein Rvan_0632 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZV8_RHOVT similarity UNIREF
DB: UNIREF100
  • Identity: 44.9
  • Coverage: 205.0
  • Bit_score: 180
  • Evalue 4.20e-42
Ku protein; K10979 DNA end-binding protein Ku similarity KEGG
DB: KEGG
  • Identity: 44.9
  • Coverage: 205.0
  • Bit_score: 180
  • Evalue 1.30e-42
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.9
  • Coverage: 205.0
  • Bit_score: 180
  • Evalue 5.90e-42

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodomicrobium vannielii → Rhodomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1080
ATGGCCCCTCGAGCTCAGTGGAACGGATACCTTCGCCTCTCGCTGGTTTCCTGCGCGGTCAGCTTGTACCCGGCCATCTCGCCGGCGGAGCGGGTCTCGTTCCGACAGGTCAATCGTGAGACCGGCAACCGGCTACGGCAGCAGCTCGTCGATACCGTCACGGGCAAGGTCGTTGAGAGCCACAATCGTGGGCGCGGCTACCAAGTGGGCGAGGAGCAGTTCCTGTTGGTGCCAGATGAAGAGCTGAAGGAAGCTCAGCTCCAGGCTAGAAGCCGCCCCTTCACTCGGTCCATGCCGACCACCGAGGATGAAGATGCGGCCCCAGCCCCTCTGCAACCTCTAAGCAAGCAACCGAAGGGCGGCCGGCGCAAGACGGAAGTAGACGAACCAGAGCCTGAAGCCCAGGAGGCTGAGCCTGAGGCGGAACTGACCAAGGCGACACCCGTGCCGCGGCCGATCGTAGAGAACACGCACACGATTGAGCTCGACCGGTTTGTCCCGAGAGAAGAGATCGATGCACGCTATCTTCTCGCTCCCTACTATCTGGCGCCTCGAGATGAGATCAGCCTCGAAGCGTACTCCGTCATTCGGGAGGCGATGGCGCATGAGGGCTTAGTCGGGATGGGACGGGTCGTGCTTTCCAACCGGGAGCGTCCCCTGATCGTTGAGCCTATGGGTCTTGGGCTGCGGGCGTTCACACTGCACTACGCGCACGAGGTGCGCTCCGAAGCTGACTACTTTGCCGACATCCGACCGCTTGAGTTGCCGGAGGAGGTCGTCGACGTCACTCAGTTGATCCTCAACACCAAGCGTGAGCACTTCGACCCCACGTACCTTGAAGACCGATACCGCACGGTGCTCGTCGAGAAGCTTCGTGAGAAGACCTCCAAGTTGCCGACAAAAGCCAAGGCGGCCCAGCCTTCAGCTCAGAACGTCATCAACCTTATGGACGCGCTGAAGGCGAGCCTAAGCGCGGCAAAACCGCCAGCCCCATCGAAGGGCCGTGATGGTTCGGGGAAGCGTAGCGATCGCGTGCCATCAACGAGCGCTAAGGCGCGCCGCTCCAAGCGGACGGGTTAG
PROTEIN sequence
Length: 360
MAPRAQWNGYLRLSLVSCAVSLYPAISPAERVSFRQVNRETGNRLRQQLVDTVTGKVVESHNRGRGYQVGEEQFLLVPDEELKEAQLQARSRPFTRSMPTTEDEDAAPAPLQPLSKQPKGGRRKTEVDEPEPEAQEAEPEAELTKATPVPRPIVENTHTIELDRFVPREEIDARYLLAPYYLAPRDEISLEAYSVIREAMAHEGLVGMGRVVLSNRERPLIVEPMGLGLRAFTLHYAHEVRSEADYFADIRPLELPEEVVDVTQLILNTKREHFDPTYLEDRYRTVLVEKLREKTSKLPTKAKAAQPSAQNVINLMDALKASLSAAKPPAPSKGRDGSGKRSDRVPSTSAKARRSKRTG*