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SCNpilot_expt_1000_bf_scaffold_1286_curated_12

Organism: scnpilot_dereplicated_Devosia_2

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(11304..12323)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.3
  • Coverage: 339.0
  • Bit_score: 641
  • Evalue 8.80e-181
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 337.0
  • Bit_score: 594
  • Evalue 2.80e-167
DNA-directed RNA polymerase subunit alpha n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC15_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 337.0
  • Bit_score: 594
  • Evalue 8.80e-167

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Taxonomy

Devosia chinhatensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1020
GTGACCATCCAGAGGAACTGGCAAGAGCTGATTAAGCCGACCAAGCTGGAGTTCGTGTCGAGCGGCGACAACGCGCGCGTGGCTTCGGTTGTGGCCGAACCGCTTGAGCGCGGCTATGGGCTGACGCTGGGCAACGCGCTGCGCCGCGTGCTGCTCTCCTCGCTCCAGGGTGCTGCCGTCACTGCCATCCAGATCGACGGCATCCTGCACGAGTTCTCGTCGCTGCCGGGCGTGCGCGAGGACATGACCGACCTGGTCCTCAACGTCAAGGAAATCGCCCTCAAGATGGGCGGCGAAGGCCCCAAGCGCCTCACGCTCAACAAGCAGGGCCCGGGCGCCGTGGTCGCCGGCGACATCAAGACCACCGGCGACATCGAAGTGCTGAACCCCGAGCTGGTGATCTGCCACCTCGACGACGGAGCCGAGATCAACATCGAGTTCACCGTCAACACCGGCAAGGGATATGTCTCTGCCGACAAGAACCGTCCCGAGGATGCGCCGATCGGCTATATCCCCGTCGACTCGCTGTTCTCCCCGGTTCGCCGCGTCTCCTACAAGGTCGACGCGACCCGTGCCGGCGAGAGCCTCGACAAGGACAAGCTGACGCTCACCGTCGAGACCAATGGCGCGATCACGCCGGAAGACGCCGTGGCCTACGCCGCGCGCATCCTGCAGGATCAGCTCTCGGTCTTCGTCAATTTCGAAGAGCCCACCAAGGAGAAGGCCCAGGACACCGTTCCCGAGCTCGCCTTCAATCCGGCGCTGCTCAAGAAGGTGGACGAGCTGGAGCTGTCGGTCCGTTCGGCCAACTGCCTCAAGAACGACAACATCGTCTACATCGGCGACCTCATCCAGAAGACCGAGGCGGAGATGCTCCGTACCCCGAACTTCGGCCGCAAGTCGCTCAACGAGATCAAGGAAGTTCTCGCCCAGATGGGTCTCCATCTCGGCATGGATGTGCCGAACTGGCCGCCTGAGAACATCGACGATCTGGCCAAACGCTACGAAGATCACTATTAA
PROTEIN sequence
Length: 340
VTIQRNWQELIKPTKLEFVSSGDNARVASVVAEPLERGYGLTLGNALRRVLLSSLQGAAVTAIQIDGILHEFSSLPGVREDMTDLVLNVKEIALKMGGEGPKRLTLNKQGPGAVVAGDIKTTGDIEVLNPELVICHLDDGAEINIEFTVNTGKGYVSADKNRPEDAPIGYIPVDSLFSPVRRVSYKVDATRAGESLDKDKLTLTVETNGAITPEDAVAYAARILQDQLSVFVNFEEPTKEKAQDTVPELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMDVPNWPPENIDDLAKRYEDHY*