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SCNpilot_expt_1000_bf_scaffold_1190_curated_24

Organism: scnpilot_dereplicated_Devosia_2

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 21451..26190

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.0
  • Coverage: 999.99
  • Bit_score: 2403
  • Evalue 0.0
rpoC; DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 999.99
  • Bit_score: 2135
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC48_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 999.99
  • Bit_score: 2254
  • Evalue 0.0

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Taxonomy

Devosia sp. DDB001 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4740
ATGCATAGCCACAATCACGTGATGGACCCGTTCAACCCCCAGGTCCCGGTGCAGATGTTCGATCAGATGAAGATCTCGATCGCCTCGCCCGAGAAGATCCTGAGCTGGTCGTACGGCGAGATCAAGAAGCCCGAAACCATCAACTACCGCACGTTCAAGCCCGAGCGTGACGGCCTGTTCTGCGCGCGCATCTTCGGGCCGGTGAAGGACTACGAGTGCCTTTGCGGCAAGTACAAGCGCATGAAGTTCAAGGGCGTCATCTGCGAGAAGTGCGGCGTCGAGGTCACGCTGAGCCGCGTGCGCCGCGAGCGCATGGGCCACATCGAGCTCGCCGCGCCGGTCGCGCACATCTGGTTCCTCAAGTCGCTGCCGTCCCGTATCGCGCTGCTGCTCGACATGACGCTCAAGGACATCGAGCGCATCCTCTACTTCGAGCAGTACGTCGTTCTGGACGCGGGCCTGACCCCGTTCACCACCAATGAGCTGCTGACCGAAGAGCAGTATCTCGACGCGCAGGACGAGTACGGCGCGGACAGCTTCACCGCCAAGATCGGCGCCGAGGCCATTCGCGACATGCTGCTCGCGCTCGACCTCGAGAAGATCGCCGCGGACCTCCGCGTCGAGATTGCCGAGTCGACCACTGAGCTCAAGCCCAAGAAACTGGCCAAGCGCCTGAAGATCGTCGAGCAGTTCATCGTCTCGGGCAACAAGCCCGAGTGGATCGGCCTGTTCTGCGCGCGCATCTTCGGGCCGGTGAAGGACTACGAGTGCCTTTGCGGCAAGTACAAGCGCATGAAGTTCAAGGGCGTCATCTGCGAGAAGTGCGGCGTCGAGGTCACGCTGAGCCGCGTGCGCCGCGAGCGCATGGGCCACATCGAGCTCGCCGCGCCGGTCGCGCACATCTGGTTCCTCAAGTCGCTGCCGTCCCGTATCGCGCTGCTGCTCGACATGACGCTCAAGGACATCGAGCGCATCCTCTACTTCGAGCAGTACGTCGTTCTGGACGCGGGCCTGACCCCGTTCACCACCAATGAGCTGCTGACCGAAGAGCAGTATCTCGACGCGCAGGACGAGTACGGCGCGGACAGCTTCACCGCCAAGATCGGCGCCGAGGCCATTCGCGACATGCTGCTCGCGCTCGACCTCGAGAAGATCGCCGCGGACCTCCGCGTCGAGATTGCCGAGTCGACCACTGAGCTCAAGCCCAAGAAACTGGCCAAGCGCCTGAAGATCGTCGAGCAGTTCATCGTCTCGGGCAACAAGCCCGAGTGGATGATCATGACCGTCATTCCGGTCATTCCGCCCGAGCTGCGCCCGCTCGTCCCGCTGGACGGCGGTCGCTTTGCGACGTCGGACCTCAACGATCTCTACCGTCGCGTCATCAACCGCAACAACCGCCTGAAGCGCCTCATCGAGCTTCGCGCGCCCGACATCATCATCCGTAACGAGAAGCGCATGCTTCAGGAAGCGGTCGATGCGCTGTTCGACAACGGCCGCCGCGGCCGCACCATCACCGGTGCGAACAAGCGTCCGCTGAAGTCGCTGAGCGACATGCTCAAGGGCAAGCAGGGCCGGTTCCGCCAGAACCTGCTCGGCAAGCGCGTGGACTATTCGGGCCGTTCGGTGATCACCGTGGGTCCGGAGCTCAAGCTCCACCAGTGCGGCCTGCCCAAGAAGATGGCGCTCGAGCTGTTCAAGCCCTTCATCTATTCGCGCCTCGAGGCCAAGGGCTTCAGCTCGACCGTGAAGCAGGCCAAGAAGCTCGTCGAAAAGGAAAAGCCCGAGGTCTGGGATATCCTTGACGAAGTGATCCGCGAGCACCCGGTTCTGCTGAACCGCGCGCCCACGCTTCACCGCCTTGGCATCCAGGCGTTCGAGCCGATCCTCATCGAGGGCAAGGCCATCCAGCTTCACCCGCTGGTGTGCGCCGCCTTCAACGCTGACTTCGACGGCGACCAGATGGCGGTGCACGTGCCGCTCTCGCTGGAAGCCCAGCTCGAAGCCCGCGTGCTGATGATGTCGACCAACAACATCCTGCATCCGGCGAACGGCCAGCCCATCATTGTGCCGTCGCAGGACATCGTGCTCGGCCTCTACCATCTCTCCCTCATGAACGAGGGCGAGCCGGGGCAGGGCATGGCGTTCTCCGACATGGGCGAGATCGAGCACGCCCTCGCCAGCGGTGTCGTGACCATGCACACCAAGATCAAGGGGCGTGTGAAGGTCTGGGACGACAAGGGCAAGTTCACGACCAAGATCGTCGAGACGACGCCCGGCCGCATGATGCTCGGTCAGCTTCTCCCCAAGGCGCCGCAGGTGCCCTACGAGACGGCCAACCAGCTCATGACCAAGAAGACCATCTCCAAGATGATCGACACGGTCTACCGTGGCTGCGGTCAGAAGGAGACGGTGATCTTCTGCGACCGCATCATGGACCTCGGCTTCAAGCATGCTGCCCGCGCCGGCATCTCGTTCGGCAAGGACGACATGGTGATCCCCGCGTCCAAGCATAAGATCGTCGAGGACACCCGCAAGCTCGTCGAAGAGTTCGAGCAGCAGTACAATGACGGCCTCATCACCCAGGGCGAGAAGTACAACAAGGTTGTCGACGCCTGGGCCAAGTGCGGCGACAAGATCGCCGACGAGATGATGAAGGGCATCGCTGCCGTTCAGATCGACAAAGAGACCAAGCGGCAGAAGCCGATCAACTCGGTCTACATGATGAGCCACTCGGGCGCGCGTGGTTCGCCGGCCCAGATGAAGCAGCTCGCCGGCATGCGCGGCCTGATGGCGCGTCCGGACGGCTCGATCATCGAGACCCCGATCACGGCCAACTTCAAGGAAGGCCTGAACGTTCTCGAGTACTTCAACTCCACCCACGGCGCCCGCAAGGGCCTCGCGGATACGGCGCTGAAGACCGCGAACTCGGGTTACCTGACCCGTCGCCTCGTCGACGTGGCGCAGGACTCGATCATCACCGAGCTCGATTGCGGCACCGAACGCGGCCTCACGATGGAAGCCATCGTCGATGCCGGCCAGGTCGTGGCCACTCTGGGTCAGCGCATTCTCGGCCGCACCACGGCCGAGTCTGTGAACCACCCCGAGACCGGCAATGTCATCGTCGAGCAGAACGTGCTGCTCACCGAAAAGGACGTGGATGCCATCGAGGCAGCCCGCGTGCAGTCGGTGAAGATCCGCTCGCCGCTGGTGTGCGATCTCCGCACGGGCTGCTGTGCGGCCTGCTACGGTCGCGACCTCGCTCGCGGCACGCCGGTCAATATCGGCGAAGCCGTCGGCGTCATCGCGGCGCAGTCGATCGGCGAACCGGGTACCCAGCTCACCATGCGCACGTTCCACATCGGTGGCACGGCGCAGGTGGTCGACAGCTCGTTCCTCGAAGCCGGCGCGGAAGGCAAGGTCGTCATCCGCAACCGCAACGTTGCCAAGGTCGAGGGCGGCATCGTCGCCATGGGCCGCAACGTGACCATCGCGATCGTCGATCCCGACGGCAAGGACCGCGCCACGCACCGCGTGACGTACGGCGCCAAGCTGCGCGTGGACGATGGTGACGAGGTCAAGCGCGGCCAGCGTATCGCCGAATGGGATCCGTACACCCGTCCGGTGCTGGCCGAAGTCGACGGCGAGGTCACGTTCGAGGACCTGGTCGATGGTGCCTCGGTTGCCGAGAACACCGACGAGACCACGGGCTTCACCAAGCGCGTCGTCATCGACTGGCGGACCAGCCAGCGTGGTGAGGGCCTCAAGCCCGCCATCACCGTCTCCCGCAAGGGTGCCGTGGCCAAGGTCGAAGGTGGTCGCGATGCCCGCTACCTGCTCTCGGTCGACGCGGTCCTTGCGGTCGAGCCCGGCGAGAAGGTGTCGGCGGGTGACGTGCTCGCGCGTATCCCGCTCGAGAGCGCCAAGACCAAGGACATCACCGGCGGTCTGCCGCGTGTGGCCGAACTGTTCGAAGCCCGCCGTCCGAAGGACCATGCGATCATTGCCGAGATCAACGGCACGATCAAATTCGGCCGCGACTACAAGAACAAGCGCCGCATCATCATCGAGCCCGAGGACGGAAGCCTCGAGCCGGTGGAGTACCTGATCCCGAAGGGCAAGCCGTTCCATCTCCAGGAAGGCGACTCCATCGAGAAGGGCGAGTACATCCTCGACGGCAACCCGGCCCCGCACGACATCCTTGCCATCAAGGGCGTCGAGGAGCTGGCGCGCTACCTCGTCAATGAGATCCAGGAGGTCTATCGCCTCCAGGGCGTGCTCATTAACGACAAGCATATCGAGGTGATCGTCCGGCAGATGCTGCAGAAGGTCGAGATCGTCAATCCGGGCGACTCGGGCATGCTCAAGGACGAGCAGCTCGACAAGCTCGACTTCGATGAGCTCAACGACCAGCTGGTTGCCGACGGCAAGAAGCCGGCGACGGCCAACCCGGTTCTGCTCGGCATCACCAAGGCGTCGCTGCAGACCCGGTCGTTCATCTCGGCCGCGTCCTTCCAGGAAACCACCCGCGTCCTCACGGAAGCGGCGGTGTCCGGCAAGGCCGACCTGCTCGAAGGCCTCAAGGAGAACGTCATCGTCGGCCGCCTGATCCCGGCGGGTACCGGTGCGGCGACCTCCAAGGCCAAGCTCACCGCGACCAAGCGCGACGACCTCATCCTCGAGGAACGCCGCCGCCAGGCCGAAACCGTCCAGATCCCGGCACCGGCCGAACCGGCCGAGTGA
PROTEIN sequence
Length: 1580
MHSHNHVMDPFNPQVPVQMFDQMKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIALLLDMTLKDIERILYFEQYVVLDAGLTPFTTNELLTEEQYLDAQDEYGADSFTAKIGAEAIRDMLLALDLEKIAADLRVEIAESTTELKPKKLAKRLKIVEQFIVSGNKPEWIGLFCARIFGPVKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIALLLDMTLKDIERILYFEQYVVLDAGLTPFTTNELLTEEQYLDAQDEYGADSFTAKIGAEAIRDMLLALDLEKIAADLRVEIAESTTELKPKKLAKRLKIVEQFIVSGNKPEWMIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPELKLHQCGLPKKMALELFKPFIYSRLEAKGFSSTVKQAKKLVEKEKPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYHLSLMNEGEPGQGMAFSDMGEIEHALASGVVTMHTKIKGRVKVWDDKGKFTTKIVETTPGRMMLGQLLPKAPQVPYETANQLMTKKTISKMIDTVYRGCGQKETVIFCDRIMDLGFKHAARAGISFGKDDMVIPASKHKIVEDTRKLVEEFEQQYNDGLITQGEKYNKVVDAWAKCGDKIADEMMKGIAAVQIDKETKRQKPINSVYMMSHSGARGSPAQMKQLAGMRGLMARPDGSIIETPITANFKEGLNVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIITELDCGTERGLTMEAIVDAGQVVATLGQRILGRTTAESVNHPETGNVIVEQNVLLTEKDVDAIEAARVQSVKIRSPLVCDLRTGCCAACYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFLEAGAEGKVVIRNRNVAKVEGGIVAMGRNVTIAIVDPDGKDRATHRVTYGAKLRVDDGDEVKRGQRIAEWDPYTRPVLAEVDGEVTFEDLVDGASVAENTDETTGFTKRVVIDWRTSQRGEGLKPAITVSRKGAVAKVEGGRDARYLLSVDAVLAVEPGEKVSAGDVLARIPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEINGTIKFGRDYKNKRRIIIEPEDGSLEPVEYLIPKGKPFHLQEGDSIEKGEYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEIVNPGDSGMLKDEQLDKLDFDELNDQLVADGKKPATANPVLLGITKASLQTRSFISAASFQETTRVLTEAAVSGKADLLEGLKENVIVGRLIPAGTGAATSKAKLTATKRDDLILEERRRQAETVQIPAPAEPAE*