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SCNpilot_expt_1000_bf_scaffold_1190_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1190_curated_1
Streptomyces lividans, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..756
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Chlorella variabilis RepID=E1Z8C4_CHLVA
Uncharacterized protein {ECO:0000313|EMBL:AIJ15497.1}; TaxID=457428 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lividans TK24.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

828..1961
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIU5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH05900.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1969..2487)
DNA (519bp) protein (173aa)
Putative periplasmic protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SMD2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB75928.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2512..4491
DNA (1980bp) protein (660aa)
Matrixin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNG2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG69195.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
RTX toxins-related Ca2+-binding protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4501..4728
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25503.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4856..5089
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RES6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27699.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_7
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5092..5448
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WZF1_MYCKA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ53440.1}; TaxID=557599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii ATCC 12478.;"
SCNpilot_expt_1000_bf_scaffold_1190_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5434..6183)
DNA (750bp) protein (250aa)
prp1; serine/threonine protein phosphatase I; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
Metallophosphoesterase n=1 Tax=Rhizobium sp. RepID=L0NLM6_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KKB77281.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_1190_curated_9
Meyerozyma guilliermondii, Meyerozyma, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

6337..7566
DNA (1230bp) protein (410aa)
Putative uncharacterized protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) RepID=A5DD47_PICGU
Putative uncharacterized protein {ECO:0000313|EMBL:EDK37104.2}; TaxID=294746 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Meyerozyma.;" source="Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM; 1539 / NBRC 10279 / NRRL Y-324) (Yeast) (Candida guilliermondii).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7612..8367)
DNA (756bp) protein (252aa)
rRNA methylase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
rRNA methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU8_PELHB
RNA methyltransferase {ECO:0000313|EMBL:KFL31398.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_1190_curated_11
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8749..9426
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EFM9_CHLL2
Uncharacterized protein {ECO:0000313|EMBL:KEO90886.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_12
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9423..10313)
DNA (891bp) protein (297aa)
UPI0003CDFD55 related cluster n=1 Tax=unknown RepID=UPI0003CDFD55
LysR family transcriptional regulator {ECO:0000313|EMBL:ESW85420.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1190_curated_13
unknown

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10416..10592
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1190_curated_14
unknown

Not on your lists

comp(10629..10886)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1190_curated_15
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11191..12330)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003752A29
Patatin {ECO:0000313|EMBL:KEJ89547.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
patatin
SCNpilot_expt_1000_bf_scaffold_1190_curated_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12449..13381
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Vibrio splendidus ATCC 33789 RepID=F9SKL6_VIBSP
Uncharacterized protein {ECO:0000313|EMBL:KKC32902.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1190_curated_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13590..13781
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Rhizobium sp. RepID=L0NEH3_RHISP
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
SCNpilot_expt_1000_bf_scaffold_1190_curated_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13818..14348
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP7_PELHB
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_1000_bf_scaffold_1190_curated_19
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14565..15011
DNA (447bp) protein (149aa)
50S ribosomal protein L11 n=1 Tax=Ahrensia sp. R2A130 RepID=E0MJD4_9RHOB
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
rplK; 50S ribosomal protein L11
SCNpilot_expt_1000_bf_scaffold_1190_curated_20
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15015..15710
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP5_PELHB
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
50S ribosomal protein L1p (L10Ae); K02863 large subunit ribosomal protein L1
SCNpilot_expt_1000_bf_scaffold_1190_curated_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15998..16516
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP4_PELHB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_1000_bf_scaffold_1190_curated_22
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16586..16966
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP3_PELHB
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_1000_bf_scaffold_1190_curated_23
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17210..21364
DNA (4155bp) protein (1385aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC44_PELHB
SCNpilot_expt_1000_bf_scaffold_1190_curated_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21451..26190
DNA (4740bp) protein (1580aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
rpoC; DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC48_PELHB
SCNpilot_expt_1000_bf_scaffold_1190_curated_25
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26239..27009)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R7W4_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG77497.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_1190_curated_26
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27133..27792
DNA (660bp) protein (220aa)
O-methyltransferase; K00599 [EC:2.1.1.-]
O-methyltransferase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4D3C5
Methyltransferase {ECO:0000313|EMBL:KFL28631.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_1190_curated_27
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28157..28528
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Maricaulis maris (strain MCS10) RepID=RS12_MARMM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_expt_1000_bf_scaffold_1190_curated_28
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28541..29011
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC43_PELHB
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
SCNpilot_expt_1000_bf_scaffold_1190_curated_29
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29024..31120
DNA (2097bp) protein (699aa)
Elongation factor G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC42_PELHB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
translation elongation factor G; K02355 elongation factor G
SCNpilot_expt_1000_bf_scaffold_1190_curated_30
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31177..31503
DNA (327bp) protein (109aa)
tuf; translation elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Acetobacter pomorum DM001 RepID=F1YSU9_9PROT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Displaying 30 items

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