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SCNpilot_cont_1000_bf_scaffold_153_curated

Search features with annotation key words

Displaying items 1-30 of 374 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_153_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93..464)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB10605.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_1000_bf_scaffold_153_curated_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(673..1224)
DNA (552bp) protein (184aa)
Cytochrome c biogenesis protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K5K5_9PROT
Cytochrome c-type biogenesis protein CcmG/DsbE, th iol:disulfide oxidoreductase {ECO:0000313|EMBL:CDP53834.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
SCNpilot_cont_1000_bf_scaffold_153_curated_3
unknown

Not on your lists

comp(1221..1385)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_153_curated_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1385..2164)
DNA (780bp) protein (260aa)
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R708_PELHB
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE {ECO:0000313|EMBL:KFC68629.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
cytochrome c-type biogenesis protein CcmC heme lyase for CcmE; K02195 heme exporter protein C
SCNpilot_cont_1000_bf_scaffold_153_curated_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2364..3017)
DNA (654bp) protein (218aa)
Heme exporter protein B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R709_PELHB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter involved in cytochrome c biogenesis, CcmB subunit; K02194 heme exporter protein B
SCNpilot_cont_1000_bf_scaffold_153_curated_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3014..3616)
DNA (603bp) protein (201aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R710_PELHB
SCNpilot_cont_1000_bf_scaffold_153_curated_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3856..6627
DNA (2772bp) protein (924aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R711_PELHB
SCNpilot_cont_1000_bf_scaffold_153_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6824..7552
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84134.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7934..8308
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30201.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8347..8760
DNA (414bp) protein (138aa)
Putative Acetyltransferase, GNAT family n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S4B1_9BRAD
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDP53453.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
GNAT family acetyltransferase
SCNpilot_cont_1000_bf_scaffold_153_curated_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8757..9557)
DNA (801bp) protein (267aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhizobium sp. AP16 RepID=J2L3X3_9RHIZ
methyltransferase
Methyltransferase {ECO:0000313|EMBL:KEA06578.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_1000_bf_scaffold_153_curated_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9554..9835)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003451A8A
Uncharacterized protein {ECO:0000313|EMBL:KKB11001.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10117..10614)
DNA (498bp) protein (166aa)
GCN5-like N-acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Putative phosphinothricin N-acetyltransferase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUJ4_9PROT
Phosphinothricin acetyltransferase {ECO:0000313|EMBL:KFC68620.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_cont_1000_bf_scaffold_153_curated_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10692..11444)
DNA (753bp) protein (251aa)
Membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y8_PELHB
FIG005935: membrane protein {ECO:0000313|EMBL:CDP53455.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K06890
SCNpilot_cont_1000_bf_scaffold_153_curated_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11684..12223
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2'-5' RNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y7_PELHB
SCNpilot_cont_1000_bf_scaffold_153_curated_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12442..13077
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RJ54_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB10823.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13143..13652
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y5_PELHB
Mlr4354 like protein {ECO:0000313|EMBL:CDP53458.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13911..15143
DNA (1233bp) protein (411aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=4
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y4_PELHB
SCNpilot_cont_1000_bf_scaffold_153_curated_19
R_Gammaproteobacteria_38_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15136..15531
DNA (396bp) protein (132aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=4 Tax=Rhizobium meliloti RepID=F6BUF7_SINMB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_38_14_curated
SCNpilot_cont_1000_bf_scaffold_153_curated_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15528..16226
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000379AA48
haloacid dehalogenase-like hydrolase; K07025 putative hydrolase of the HAD superfamily
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:ABG65391.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_1000_bf_scaffold_153_curated_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16296..17141)
DNA (846bp) protein (282aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y1_PELHB
protein involved in catabolism of external DNA; K07115
SCNpilot_cont_1000_bf_scaffold_153_curated_22
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17161..17811)
DNA (651bp) protein (217aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y0_PELHB
Threonine transporter RhtB {ECO:0000313|EMBL:KFL25431.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
lysine exporter protein LysE/YggA
SCNpilot_cont_1000_bf_scaffold_153_curated_23
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17896..19119
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
argG2; argininosuccinate synthase; K01940 argininosuccinate synthase [EC:6.3.4.5]
Argininosuccinate synthase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA15_AGRRK
SCNpilot_cont_1000_bf_scaffold_153_curated_24
unknown

Not on your lists

19281..19733
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_153_curated_25
unknown

Not on your lists

19724..20167
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_153_curated_26
unknown

Not on your lists

20158..20556
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_153_curated_27
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20840..22954
DNA (2115bp) protein (705aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF74_PELHB
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CDP53756.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains
SCNpilot_cont_1000_bf_scaffold_153_curated_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23124..24938
DNA (1815bp) protein (605aa)
GTP-binding protein TypA/BipA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X5_PELHB
GTP-binding protein TypA {ECO:0000313|EMBL:KFL25428.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
GTP-binding protein TypA; K06207 GTP-binding protein
SCNpilot_cont_1000_bf_scaffold_153_curated_29
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24998..25351
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T340_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP78604.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_153_curated_30
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25348..25716
DNA (369bp) protein (123aa)
Possible transcriptional regulatory protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T339_9RHOB
Possible transcriptional regulatory protein {ECO:0000313|EMBL:EAP78603.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
HTH-type transcriptional regulator PuuR
Displaying items 1-30 of 374 in total

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