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SCNpilot_expt_1000_bf_scaffold_17_curated

Search features with annotation key words

Displaying items 1-30 of 313 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_17_curated_1
unknown

Not on your lists

1..84
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17_curated_2
Leptospira borgpetersenii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(172..1014)
DNA (843bp) protein (281aa)
ada; methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] id=7717882 bin=BACIGN_2 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=BACIGN_2 organism_group=Unknown_CP
ada; methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
Cysteine methyltransferase {ECO:0000313|EMBL:KGE26365.1}; TaxID=280505 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira borgpetersenii serovar Ballum.;"
SCNpilot_expt_1000_bf_scaffold_17_curated_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(1122..2240)
DNA (1119bp) protein (373aa)
ABC transporter; K09686 antibiotic transport system permease protein id=7717881 bin=BACIGN_2 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
ABC transporter; K09686 antibiotic transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_4
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(2237..3343)
DNA (1107bp) protein (369aa)
ABC transporter; K09686 antibiotic transport system permease protein id=7717880 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
multidrug ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_5
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3348..4091)
DNA (744bp) protein (248aa)
sulfate-transporting ATPase; K01990 ABC-2 type transport system ATP-binding protein id=7717879 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFK56961.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
sulfate-transporting ATPase; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_17_curated_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4093..5010)
DNA (918bp) protein (306aa)
ABC transporter id=7717878 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
multidrug ABC transporter ATPase
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:AFD07579.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_expt_1000_bf_scaffold_17_curated_7
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5018..5914)
DNA (897bp) protein (299aa)
biotin/lipoyl attachment domain-containing protein; K01993 HlyD family secretion protein id=7717877 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Uncharacterized protein {ECO:0000313|EMBL:EFK34017.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17_curated_8
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(5927..7204)
DNA (1278bp) protein (426aa)
outer membrane efflux protein id=7717876 bin=BACIGN_2 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Transporter {ECO:0000313|EMBL:KIF30744.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_17_curated_9
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(7201..7833)
DNA (633bp) protein (211aa)
TetR family transcriptional regulator id=7717875 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_10
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(8294..9292)
DNA (999bp) protein (333aa)
polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] id=7717874 bin=BACIGN_2 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP
polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_11
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9321..10478)
DNA (1158bp) protein (386aa)
isopentenyl pyrophosphate isomerase (EC:5.3.3.2); K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2] id=7717873 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
isopentenyl pyrophosphate isomerase (EC:5.3.3.2); K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2]
Tax=GWA2_Ignavibacteria_54_16_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(10656..11711)
DNA (1056bp) protein (352aa)
DNA protecting protein DprA; K04096 DNA processing protein id=7717872 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
DNA protecting protein DprA; K04096 DNA processing protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_13
unknown

Not on your lists

comp(11750..14752)
DNA (3003bp) protein (1001aa)
id=7717871 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_17_curated_14
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(14749..16101)
DNA (1353bp) protein (451aa)
manB; phosphomannomutase id=7717870 bin=BACIGN_2 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
manB; phosphomannomutase
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_15
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(16123..17514)
DNA (1392bp) protein (464aa)
pepP1; Xaa-Pro aminopeptidase, family M24 (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] id=7717869 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
pepP1; Xaa-Pro aminopeptidase, family M24 (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
X-Pro aminopeptidase {ECO:0000313|EMBL:BAL55624.1}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
SCNpilot_expt_1000_bf_scaffold_17_curated_16
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(17551..18282)
DNA (732bp) protein (244aa)
hypothetical protein id=7717868 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_17
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18287..19357)
DNA (1071bp) protein (357aa)
Tryptophan 2,3-dioxygenase (EC:1.13.11.11); K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11] id=7717867 bin=BACIGN_2 species=Kangiella koreensis genus=Kangiella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
Tryptophan 2,3-dioxygenase (EC:1.13.11.11); K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
Tryptophan 2 3-dioxygenase {ECO:0000313|EMBL:AKE51870.1}; TaxID=914150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
SCNpilot_expt_1000_bf_scaffold_17_curated_18
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19354..19926)
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=7717866 bin=BACIGN_2 species=uncultured Flavobacteriia bacterium genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
yckC3; putative RDD domain containing protein
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_19
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19955..21826)
DNA (1872bp) protein (624aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] id=7717865 bin=BACIGN_2 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=BACIGN_2 organism_group=Unknown_CP
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
Tax=GWA2_Ignavibacteria_54_16_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_20
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(21823..22275)
DNA (453bp) protein (151aa)
hypothetical protein id=7717864 bin=BACIGN_2 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=CG_Deferri_01
SCNpilot_expt_1000_bf_scaffold_17_curated_21
Chryseobacterium luteum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22382..22792
DNA (411bp) protein (137aa)
hypothetical protein id=7717863 bin=BACIGN_2 species=Chryseobacterium sp. CF314 genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Uncharacterized protein {ECO:0000313|EMBL:KFF01876.1}; TaxID=421531 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium luteum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17_curated_22
unknown

Not on your lists

comp(22892..23134)
DNA (243bp) protein (81aa)
id=7717862 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_17_curated_23
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23149..25644)
DNA (2496bp) protein (832aa)
hypothetical protein id=7717861 bin=BACIGN_2 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Glutamyl-and glutaminyl-tRNA synthetase {ECO:0000313|EMBL:EMR01863.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17_curated_24
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

25827..26678
DNA (852bp) protein (284aa)
OMP decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=7717860 bin=BACIGN_2 species=Leeuwenhoekiella blandensis genus=Leeuwenhoekiella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
OMP decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_25
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

26792..27784
DNA (993bp) protein (331aa)
hypothetical protein id=7717859 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_26
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28515..28901)
DNA (387bp) protein (129aa)
bleomycin resistance protein; K07032 id=7717858 bin=BACIGN_2 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Glyoxalase {ECO:0000313|EMBL:AIM37526.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
bleomycin resistance protein; K07032
SCNpilot_expt_1000_bf_scaffold_17_curated_27
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

29249..30262
DNA (1014bp) protein (338aa)
putative L-threonine dehydrogenase id=7717857 bin=BACIGN_2 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:BAL60023.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
putative L-threonine dehydrogenase
SCNpilot_expt_1000_bf_scaffold_17_curated_28
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30252..32267
DNA (2016bp) protein (672aa)
hypothetical protein; K06888 id=7717856 bin=BACIGN_2 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
Thymidylate kinase {ECO:0000313|EMBL:KHK04342.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein; K06888
SCNpilot_expt_1000_bf_scaffold_17_curated_29
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

32267..33745
DNA (1479bp) protein (493aa)
O-antigen polymerase id=7717855 bin=BACIGN_2 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=BACIGN_2 organism_group=Unknown_CP
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_17_curated_30
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

33723..34598
DNA (876bp) protein (292aa)
folD; 5,10-Methylene-tetrahydrofolate dehydrogenase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] id=7717854 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
folD; 5,10-Methylene-tetrahydrofolate dehydrogenase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Displaying items 1-30 of 313 in total

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