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scnpilot_p_inoc_scaffold_536_curated

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_536_curated_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..718
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1V9_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM76866.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_536_curated_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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718..1176
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1W0_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM76867.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_536_curated_3
unknown

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comp(1173..1388)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_536_curated_4
unknown

Not on your lists

comp(2314..2952)
DNA (639bp) protein (213aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_536_curated_5
unknown

Not on your lists

3106..3399
DNA (294bp) protein (98aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_536_curated_6
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3641..3967)
DNA (327bp) protein (109aa)
UPF0060 membrane protein amb3269 n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Y3269_MAGSA
hypothetical protein; K09771 hypothetical protein
UPF0060 membrane protein amb3269 {ECO:0000255|HAMAP-Rule:MF_00010}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_536_curated_7
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3969..4352)
DNA (384bp) protein (128aa)
Regulatory protein, MerR n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1Z7_9PROT
Transcriptional regulator MerR family {ECO:0000313|EMBL:KIL99099.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
MerR family transcriptional regulator
scnpilot_p_inoc_scaffold_536_curated_8
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4436..5071
DNA (636bp) protein (212aa)
Putative membrane protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGC8_METPP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
scnpilot_p_inoc_scaffold_536_curated_9
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5068..5544
DNA (477bp) protein (159aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G210_9GAMM
scnpilot_p_inoc_scaffold_536_curated_10
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5607..6023)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00035F64D4
Transcriptional regulator MerR family {ECO:0000313|EMBL:KIL99099.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
MerR family transcriptional regulator
scnpilot_p_inoc_scaffold_536_curated_11
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6141..6587
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I7E5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KIL99095.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_536_curated_12
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7287..7733
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EZJ3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDK97461.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein; K09796 hypothetical protein
scnpilot_p_inoc_scaffold_536_curated_13
Idiomarina salinarum, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7749..8249
DNA (501bp) protein (167aa)
Disulfide bond formation protein DsbB n=1 Tax=Pseudomonas sp. enrichment culture clone E.Cd15 RepID=I6QII1_9PSED
Disulfide bond formation protein {ECO:0000313|EMBL:KFZ30827.1}; TaxID=435908 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina salinarum.;"
disulfide bond formation protein; K03611 disulfide bond formation protein DsbB
scnpilot_p_inoc_scaffold_536_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8246..8908
DNA (663bp) protein (221aa)
DSBA oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NQW7_9RHIZ
DSBA oxidoreductase {ECO:0000313|EMBL:EKF40239.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DSBA oxidoreductase
scnpilot_p_inoc_scaffold_536_curated_15
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9039..9482)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W5F3_MAGSA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE50922.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_536_curated_16
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9987..10439
DNA (453bp) protein (151aa)
Putative transcriptional regulator (MarR family protein) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T7M0_9BRAD
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:EZP69566.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
putative transcriptional regulator
scnpilot_p_inoc_scaffold_536_curated_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10470..10871
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A736_9SPHN
Phage envelope protein {ECO:0000313|EMBL:EZP69567.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
scnpilot_p_inoc_scaffold_536_curated_18
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10905..12980)
DNA (2076bp) protein (692aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GPK2_9DELT
Two-component response regulator {ECO:0000313|EMBL:KHK01432.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
sigB; sigma factor SigB regulation protein rsbU
scnpilot_p_inoc_scaffold_536_curated_19
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13104..15167)
DNA (2064bp) protein (688aa)
Methyl-accepting chemotaxis protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W3I3_MAGSA
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:BAE51592.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_536_curated_20
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15268..16494)
DNA (1227bp) protein (409aa)
tRNA-processing RNAse BN (EC:3.1.-.-); K07058 membrane protein
Putative inner membrane protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F7F7_9PROT
UPF0761 membrane protein MGMSRv2__4240 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
scnpilot_p_inoc_scaffold_536_curated_21
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16593..17411
DNA (819bp) protein (273aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094, ECO:0000313|EMBL:CDL01456.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
enoyl-acyl-carrier-protein reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TV48_9PROT
scnpilot_p_inoc_scaffold_536_curated_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17415..18497
DNA (1083bp) protein (361aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F7X2_9PROT
scnpilot_p_inoc_scaffold_536_curated_23
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18555..21848
DNA (3294bp) protein (1098aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CDL01458.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Putative Signal transduction histidine kinase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F916_9PROT
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_536_curated_24
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21845..22321)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TV45_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM74502.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_536_curated_25
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22432..23250
DNA (819bp) protein (273aa)
Flagellin gene flaB n=2 Tax=Magnetospirillum gryphiswaldense RepID=Q6LWI5_9PROT
Flagellin {ECO:0000313|EMBL:CAM74501.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
flagellin domain-containing protein
scnpilot_p_inoc_scaffold_536_curated_26
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23247..23612
DNA (366bp) protein (122aa)
Flagellar FlaF n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TV43_9PROT
Putative flagellar protein FlaF {ECO:0000313|EMBL:CDL01461.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
putative flagellar protein FlaF; K06602 flagellar protein FlaF
scnpilot_p_inoc_scaffold_536_curated_27
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23758..24093
DNA (336bp) protein (112aa)
Rhodanese domain protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TV42_9PROT
Putative Rhodanese domain protein {ECO:0000313|EMBL:CDL01462.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
rhodanese-related sulfurtransferase
scnpilot_p_inoc_scaffold_536_curated_28
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24169..25935
DNA (1767bp) protein (589aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
periplasmic serine protease; K04773 protease IV [EC:3.4.21.-]
Protease(Signal peptide peptidase) n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F918_9PROT
scnpilot_p_inoc_scaffold_536_curated_29
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25932..26675
DNA (744bp) protein (248aa)
Putative acyl-carrier-protein reductase,short-chain dehydrogenases/reductases (SDR) family {ECO:0000313|EMBL:CDL01464.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDL01464.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TUA5_9PROT
dehydrogenase
scnpilot_p_inoc_scaffold_536_curated_30
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26799..27695)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUA4_9PROT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CAM74211.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
transcriptional regulator
Displaying items 1-30 of 66 in total

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