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SCNpilot_expt_1000_bf_scaffold_1699_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1699_curated_1
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1063
DNA (1062bp) protein (354aa)
serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:ABG61240.1}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:ABG61240.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Serine hydroxymethyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11NC8_MESSB
SCNpilot_expt_1000_bf_scaffold_1699_curated_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1056..2444
DNA (1389bp) protein (463aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:ABG61239.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11NC9_MESSB
SCNpilot_expt_1000_bf_scaffold_1699_curated_3

Not on your lists

comp(2537..2926)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BF76_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60789.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1699_curated_4
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3680..4042
DNA (363bp) protein (121aa)
Glycine cleavage system H protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11NC0_MESSB
glycine cleavage system H protein; K02437 glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272, ECO:0000313|EMBL:ABG61237.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1699_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4054..6900
DNA (2847bp) protein (949aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711, ECO:0000313|EMBL:ABG61236.1};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strai
glycine dehydrogenase (EC:1.4.4.2); K00281 glycine dehydrogenase [EC:1.4.4.2]
Glycine dehydrogenase (decarboxylating) n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11NC1_MESSB
SCNpilot_expt_1000_bf_scaffold_1699_curated_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6952..8334
DNA (1383bp) protein (461aa)
L-serine ammonia-lyase (EC:4.3.1.17); K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine ammonia-lyase {ECO:0000313|EMBL:ABG61235.1}; EC=4.3.1.17 {ECO:0000313|EMBL:ABG61235.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
L-serine ammonia-lyase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11NC2_MESSB
SCNpilot_expt_1000_bf_scaffold_1699_curated_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8575..8838)
DNA (264bp) protein (88aa)
Transcription regulator protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS48_9RHIZ
Transcription regulator protein {ECO:0000313|EMBL:EIM72400.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8968..9957
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000376413D
Uncharacterized protein {ECO:0000313|EMBL:EAQ33425.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
leucyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_1699_curated_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10142..10903)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMG4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL01285.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10925..11311)
DNA (387bp) protein (129aa)
Mlr9111 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982E7_RHILO
hypothetical protein
Mlr9111 protein {ECO:0000313|EMBL:BAB54512.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1699_curated_11
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11638..13071)
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003661C0C
Uncharacterized protein {ECO:0000313|EMBL:ESY27705.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
phage protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_12
unknown

Not on your lists

comp(13052..13549)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1699_curated_13
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13542..14885)
DNA (1344bp) protein (448aa)
DNA methylase N-4 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A7E3DD
Prophage LambdaMc01, DNA methyltransferase {ECO:0000313|EMBL:EAQ13580.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
putative DNA modification methylase
SCNpilot_expt_1000_bf_scaffold_1699_curated_14
unknown

Not on your lists

comp(14966..15661)
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1699_curated_15
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16153..17460
DNA (1308bp) protein (436aa)
Putative flavoprotein involved in K+ transport n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJ26_MESAW
FAD dependent oxidoreductase {ECO:0000313|EMBL:CDX30146.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
putative flavoprotein involved in K+ transport
SCNpilot_expt_1000_bf_scaffold_1699_curated_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17615..18031
DNA (417bp) protein (139aa)
UPI0003CE3F96 related cluster n=1 Tax=unknown RepID=UPI0003CE3F96
Endoribonuclease {ECO:0000313|EMBL:ESY71631.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_1699_curated_17
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18037..18711
DNA (675bp) protein (225aa)
UPI0003D01626 related cluster n=1 Tax=unknown RepID=UPI0003D01626
Uncharacterized protein {ECO:0000313|EMBL:ESZ28570.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_18
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18733..20223
DNA (1491bp) protein (497aa)
Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase,NAD(P)H-dependent {ECO:0000313|EMBL:CCV14388.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCV14388.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
aldehyde dehydrogenase (EC:1.2.1.8); K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase,NAD(P)H-dependent n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE19_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1699_curated_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20274..21206
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAX8_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCV14387.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1699_curated_20
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21210..22376)
DNA (1167bp) protein (389aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
acetylornithine deacetylase (ArgE); K01438 acetylornithine deacetylase [EC:3.5.1.16]
UPI0003D04856 related cluster n=1 Tax=unknown RepID=UPI0003D04856
SCNpilot_expt_1000_bf_scaffold_1699_curated_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22644..24713
DNA (2070bp) protein (690aa)
Trimethylamine dehydrogenase {ECO:0000313|EMBL:CDX32839.1}; EC=1.5.8.2 {ECO:0000313|EMBL:CDX32839.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8J9_MESCW
NADH:flavin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1699_curated_22
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24783..26384)
DNA (1602bp) protein (534aa)
UPI0003CFABF1 related cluster n=1 Tax=unknown RepID=UPI0003CFABF1
Alcohol dehydrogenase {ECO:0000313|EMBL:ESZ28582.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
choline dehydrogenase-like flavoprotein
SCNpilot_expt_1000_bf_scaffold_1699_curated_23
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26445..27482)
DNA (1038bp) protein (346aa)
UPI0003CFEF89 related cluster n=1 Tax=unknown RepID=UPI0003CFEF89
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
potD; spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_24
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27611..28312)
DNA (702bp) protein (234aa)
UPI0003CFED2F related cluster n=1 Tax=unknown RepID=UPI0003CFED2F
Amino acid ABC transporter ATPase {ECO:0000313|EMBL:ESZ28573.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1699_curated_25
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28305..29090)
DNA (786bp) protein (262aa)
UPI0003D050D9 related cluster n=1 Tax=unknown RepID=UPI0003D050D9
ABC transporter {ECO:0000313|EMBL:ESZ28574.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
branched-chain amino acid ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1699_curated_26
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29087..29299)
DNA (213bp) protein (71aa)
UPI0003D005AC related cluster n=1 Tax=unknown RepID=UPI0003D005AC
ABC transporter permease {ECO:0000313|EMBL:ESZ28575.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
branched chain amino acid ABC transporter
Displaying 26 items

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