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SCNpilot_expt_1000_bf_scaffold_1101_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1101_curated_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..678
DNA (678bp) protein (226aa)
PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17E8E
Uncharacterized protein {ECO:0000313|EMBL:CCV03536.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_1101_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(738..1115)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003117850
UPF0102 protein MPL3365_80147 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative endonuclease related to Holliday junction resolvase
SCNpilot_expt_1000_bf_scaffold_1101_curated_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1108..2004)
DNA (897bp) protein (299aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Putative methyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EZ14_9RHIZ
putative S-adenosylmethionine-dependent methyltransferase, YraL family
SCNpilot_expt_1000_bf_scaffold_1101_curated_4
unknown

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2151..2333
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1101_curated_5
unknown

Not on your lists

2341..2532
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1101_curated_6
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2536..3693)
DNA (1158bp) protein (386aa)
oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxidoreductase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIF3_9RHIZ
Putative oxidoreductase {ECO:0000313|EMBL:CCV04172.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_1101_curated_7
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3696..4343)
DNA (648bp) protein (216aa)
deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
Non-canonical purine NTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405}; EC=3.6.1.19 {ECO:0000255|HAMAP-Rule:MF_01405};; Non-standard purine NTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000255|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405}; Short=NTPase {ECO:0000255|HAMAP-Rule:MF_01405};; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.
NTP phosphatase n=1 Tax=Rhizobium loti RepID=UPI00036239EE
SCNpilot_expt_1000_bf_scaffold_1101_curated_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4343..4753)
DNA (411bp) protein (137aa)
UPI0003CEA6B1 related cluster n=1 Tax=unknown RepID=UPI0003CEA6B1
Bleomycin resistance protein {ECO:0000313|EMBL:EZQ13193.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
lactoylglutathione lyase
SCNpilot_expt_1000_bf_scaffold_1101_curated_9
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4764..5480)
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
Ribonuclease PH n=3 Tax=Mesorhizobium RepID=V7FX92_9RHIZ
ribonuclease PH
SCNpilot_expt_1000_bf_scaffold_1101_curated_10
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5626..6711
DNA (1086bp) protein (362aa)
UPI0003CF2875 related cluster n=1 Tax=unknown RepID=UPI0003CF2875
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_1101_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6744..6941
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFQ9_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV09939.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1101_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7826..8359
DNA (534bp) protein (178aa)
Sorbosone dehydrogenase n=2 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H1R2_9RHIZ
NHL repeat containing protein {ECO:0000313|EMBL:CDX27566.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
NHL repeat containing protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8369..9145)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EXL6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09832.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_14
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9431..11770)
DNA (2340bp) protein (780aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F103_9RHIZ
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CCV09833.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1101_curated_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11883..15362)
DNA (3480bp) protein (1160aa)
Pyruvate/ketoisovalerate oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
Pyruvate/ketoisovalerate oxidoreductase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0H7_MESOW
Uncharacterized protein {ECO:0000313|EMBL:CDX42199.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_1101_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15493..16023)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FC72C0
Uncharacterized protein {ECO:0000313|EMBL:CDX37795.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_17
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16016..16642)
DNA (627bp) protein (209aa)
UPI0003CED3D9 related cluster n=1 Tax=unknown RepID=UPI0003CED3D9
Uncharacterized protein {ECO:0000313|EMBL:ESY35065.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_18
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16735..17640
DNA (906bp) protein (302aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EH04_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:CCV03555.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_19
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17830..18522
DNA (693bp) protein (231aa)
UPI0003CE3190 related cluster n=1 Tax=unknown RepID=UPI0003CE3190
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:CDX41002.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
TRAP-type mannitol/chloroaromatic compound transport system, small permease component
SCNpilot_expt_1000_bf_scaffold_1101_curated_20
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18519..20234
DNA (1716bp) protein (572aa)
C4-dicarboxylate ABC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI000370006D
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:ESZ22915.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_1000_bf_scaffold_1101_curated_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20335..21444)
DNA (1110bp) protein (370aa)
UPI0003CF3A43 related cluster n=1 Tax=unknown RepID=UPI0003CF3A43
TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoM {ECO:0000313|EMBL:AID34006.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
family 7 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_22
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21739..22512
DNA (774bp) protein (258aa)
PREDICTED: putative glutamine amidotransferase PB2B2.05-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C134DA
Glutamine amidotransferase {ECO:0000313|EMBL:ESZ22538.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein; K07010 putative glutamine amidotransferase rbh
SCNpilot_expt_1000_bf_scaffold_1101_curated_23
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22515..23495)
DNA (981bp) protein (327aa)
Glyoxylate reductase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FD00_9RHIZ
Dehydrogenase {ECO:0000313|EMBL:EZQ13199.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23492..24475)
DNA (984bp) protein (328aa)
UPI0003CE5059 related cluster n=1 Tax=unknown RepID=UPI0003CE5059
Transcriptional regulator {ECO:0000313|EMBL:EXL02545.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1101_curated_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24624..25565)
DNA (942bp) protein (314aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KC11_MESAW
Multidrug transporter {ECO:0000313|EMBL:EXL02544.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
DMT(drug/metabolite transporter) superfamily permease
SCNpilot_expt_1000_bf_scaffold_1101_curated_26
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25680..26147)
DNA (468bp) protein (156aa)
UPI0003D00F63 related cluster n=1 Tax=unknown RepID=UPI0003D00F63
MarR family transcriptional regulator {ECO:0000313|EMBL:ESZ22543.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1101_curated_27
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26338..27516)
DNA (1179bp) protein (393aa)
HI0933 family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZW0_OCHA4
hypothetical protein; K07007
HI0933 family protein {ECO:0000313|EMBL:ABS14514.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_1101_curated_28
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27703..28806
DNA (1104bp) protein (368aa)
PREDICTED: COBW domain-containing protein 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C191C4
Cobalamin biosynthesis protein CobW {ECO:0000313|EMBL:EZQ13203.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1101_curated_29
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28810..29784
DNA (975bp) protein (325aa)
UPI0003CE7DDC related cluster n=1 Tax=unknown RepID=UPI0003CE7DDC
Uncharacterized protein {ECO:0000313|EMBL:CDX41046.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1101_curated_30
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29859..31235
DNA (1377bp) protein (459aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Aminotransferase class-III n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y1K8_MESOW
Putative aminotransferase {ECO:0000313|EMBL:CDX26789.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Displaying items 1-30 of 42 in total

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