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SCNpilot_expt_1000_bf_scaffold_1464_curated

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1464_curated_1
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..812)
DNA (810bp) protein (270aa)
PAS sensor protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCW4_MESCW
PAS sensor protein
PAS sensor protein {ECO:0000313|EMBL:ADV12089.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_2
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(912..1400)
DNA (489bp) protein (163aa)
Putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMX9_9RHIZ
Putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain {ECO:0000313|EMBL:CCV05692.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1464_curated_3
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1413..1691)
DNA (279bp) protein (93aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01R86_SOLUE
Putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain {ECO:0000313|EMBL:CDX31856.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1464_curated_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2003..2302
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX40108.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_5
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2361..2540
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX22487.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2648..2932
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KN14_MESAW
PRC-barrel domain protein {ECO:0000313|EMBL:CDX22418.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_7
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2944..3264
DNA (321bp) protein (107aa)
plasmid stabilization protein n=1 Tax=Rhizobium loti RepID=UPI00036B7DBC
Plasmid stabilization system protein {ECO:0000313|EMBL:AID28278.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_8
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3374..3574)
DNA (201bp) protein (67aa)
UPI0003CF3ECF related cluster n=1 Tax=unknown RepID=UPI0003CF3ECF
Uncharacterized protein {ECO:0000313|EMBL:ESY73080.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_9
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3673..4884
DNA (1212bp) protein (404aa)
FAD dependent oxidoreductase n=1 Tax=Rhizobium loti RepID=UPI00037AB3A0
FAD dependent oxidoreductase family protein {ECO:0000313|EMBL:AID32335.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1464_curated_10
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5392..6027
DNA (636bp) protein (212aa)
DNA topoisomerase n=1 Tax=Rhizobium loti RepID=UPI00036F5F7C
Putative DNA topoisomerase {ECO:0000313|EMBL:AID32211.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
topoisomerase IB
SCNpilot_expt_1000_bf_scaffold_1464_curated_11
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7029..7313
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IEV8_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP44914.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7529..9274
DNA (1746bp) protein (582aa)
Phage integrase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYC3_9BRAD
Phage integrase {ECO:0000313|EMBL:EAQ35017.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
phage integrase
SCNpilot_expt_1000_bf_scaffold_1464_curated_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9281..10315
DNA (1035bp) protein (345aa)
Phage integrase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMV9_NITWN
putative integrase
Putative integrase {ECO:0000313|EMBL:AEI05407.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_14
unknown

Not on your lists

10373..10534
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1464_curated_15
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10685..12172)
DNA (1488bp) protein (496aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Sensor protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EIG8_9RHIZ
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1464_curated_16
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12665..13081
DNA (417bp) protein (139aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EW67_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1464_curated_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13090..14886
DNA (1797bp) protein (599aa)
Membrane protein insertase YidC n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHP9_9RHIZ
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
YidC/Oxa1 family membrane protein; K03217 preprotein translocase subunit YidC
SCNpilot_expt_1000_bf_scaffold_1464_curated_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14960..15994)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030D75BC
Glycine/betaine ABC transporter {ECO:0000313|EMBL:EZQ17335.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
glycine betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16070..16987)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036AE0D8
Glycine/betaine ABC transporter permease {ECO:0000313|EMBL:EZQ17336.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
L-proline glycine betaine ABC transport system permease protein ProW; K02001 glycine betaine/proline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_20
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16993..18087)
DNA (1095bp) protein (365aa)
L-proline glycine betaine ABC transport system permease protein ProV; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003018183
Glycine/betaine ABC transporter ATPase {ECO:0000313|EMBL:EXL09146.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_21
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18366..19283)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037579A4
LysR family transcriptional regulator {ECO:0000313|EMBL:EXL09147.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
gcvA6; glycine cleavage system transcriptional activator
SCNpilot_expt_1000_bf_scaffold_1464_curated_22
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19384..21864)
DNA (2481bp) protein (827aa)
DEAD/DEAH box helicase; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
UPI0003D03A80 related cluster n=1 Tax=unknown RepID=UPI0003D03A80
ATP-dependent helicase {ECO:0000313|EMBL:ESZ60369.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
SCNpilot_expt_1000_bf_scaffold_1464_curated_23
unknown

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comp(21987..22259)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1464_curated_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22340..23326)
DNA (987bp) protein (329aa)
Putative enzyme {ECO:0000313|EMBL:CCV09938.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCV09938.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Putative enzyme n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1A3_9RHIZ
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_25
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23405..23986)
DNA (582bp) protein (194aa)
Polyprenyl-pyrophosphate binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FD71_9RHIZ
Polyprenyl-pyrophosphate binding protein {ECO:0000313|EMBL:CDX18827.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1464_curated_26
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24053..24640)
DNA (588bp) protein (196aa)
UPI0003CEC57B related cluster n=1 Tax=unknown RepID=UPI0003CEC57B
Cytochrome B {ECO:0000313|EMBL:ESX99969.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
cytochrome b561
SCNpilot_expt_1000_bf_scaffold_1464_curated_27
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24694..25584)
DNA (891bp) protein (297aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Rhizobium loti RepID=UPI00036B8710
SCNpilot_expt_1000_bf_scaffold_1464_curated_28
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27089..28174)
DNA (1086bp) protein (362aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030DDDC4
phenylalanyl-tRNA synthetase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_1464_curated_29
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28171..29199)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003625B93
Serine/threonine protein phosphatase {ECO:0000313|EMBL:EXL09154.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Mn2+-dependent serine/threonine protein kinase
SCNpilot_expt_1000_bf_scaffold_1464_curated_30
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(29237..29638)
DNA (402bp) protein (134aa)
UPI0003D05DCF related cluster n=1 Tax=unknown RepID=UPI0003D05DCF
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Displaying items 1-30 of 50 in total

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