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SCNpilot_cont_1000_bf_scaffold_56_curated

Search features with annotation key words

Displaying items 1-30 of 241 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_56_curated_1
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..102)
DNA (102bp) protein (34aa)
UPI0003CE0FB7 related cluster n=1 Tax=unknown RepID=UPI0003CE0FB7
tuf; elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_1000_bf_scaffold_56_curated_2
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

379..1578
DNA (1200bp) protein (400aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRK4_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESX82162.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_3
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1695..2582
DNA (888bp) protein (296aa)
Uncharacterized protein n=3 Tax=Mesorhizobium RepID=V7G943_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESW71618.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
EamA-like transporter family
SCNpilot_cont_1000_bf_scaffold_56_curated_4
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2665..2802
DNA (138bp) protein (46aa)
UPI0003D05574 related cluster n=1 Tax=unknown RepID=UPI0003D05574
Uncharacterized protein {ECO:0000313|EMBL:ESZ25340.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2935..3192)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EPQ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV06729.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transglycosylase
SCNpilot_cont_1000_bf_scaffold_56_curated_6
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3321..3758
DNA (438bp) protein (146aa)
Mlr5750 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98B32_RHILO
Uncharacterized protein {ECO:0000313|EMBL:AID29872.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_trna_1
unknown

Not on your lists

3928..3998
DNA (71bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_56_curated_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4323..5867
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IEU7_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89535.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_1000_bf_scaffold_56_curated_trna_6
unknown

Not on your lists

comp(6076..6157)
DNA (82bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_56_curated_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6258..7205
DNA (948bp) protein (316aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase n=1 Tax=Rhizobium loti RepID=UPI00037256EC
TrmH family RNA methyltransferase {ECO:0000313|EMBL:CDX11301.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_cont_1000_bf_scaffold_56_curated_9
unknown

Not on your lists

7219..7635
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_56_curated_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7807..8724)
DNA (918bp) protein (306aa)
Tartronate semialdehyde reductase, NADH-dependent {ECO:0000313|EMBL:CDX21422.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CDX21422.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
oxidoreductase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] rbh
UPI0003CFB77E related cluster n=1 Tax=unknown RepID=UPI0003CFB77E
SCNpilot_cont_1000_bf_scaffold_56_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8914..9711)
DNA (798bp) protein (266aa)
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Hydroxypyruvate isomerase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLG7_MESCW
SCNpilot_cont_1000_bf_scaffold_56_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9831..11612)
DNA (1782bp) protein (594aa)
Glyoxylate carboligase (Tartronate-semialdehyde synthase) {ECO:0000313|EMBL:CDX31300.1}; EC=4.1.1.47 {ECO:0000313|EMBL:CDX31300.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
glyoxylate carboligase (EC:4.1.1.47); K01608 tartronate-semialdehyde synthase [EC:4.1.1.47] rbh
Glyoxylate carboligase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHB4_9RHIZ
SCNpilot_cont_1000_bf_scaffold_56_curated_13
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11819..12658
DNA (840bp) protein (280aa)
Transcriptional regulator IclR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLG5_MESCW
IclR family transcriptional regulator; K13641 IclR family transcriptional regulator, acetate operon repressor
Transcriptional regulator IclR {ECO:0000313|EMBL:ADV12716.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_56_curated_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12738..13214
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV06722.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13357..13662)
DNA (306bp) protein (102aa)
BA14K-like protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRA3_MESAW
BA14K family protein {ECO:0000313|EMBL:CDX11293.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
BA14K-like protein
SCNpilot_cont_1000_bf_scaffold_56_curated_16
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13858..14064)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037D09E5
Uncharacterized protein {ECO:0000313|EMBL:ETA72896.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_17
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14269..14436)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX82150.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_56_curated_trna_2
unknown

Not on your lists

14589..14661
DNA (73bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_56_curated_18
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14854..15540
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000375931D
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:EJF90267.1}; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
putative outer membrane protein
SCNpilot_cont_1000_bf_scaffold_56_curated_19
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15639..16253)
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHC6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH07818.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_56_curated_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16346..17437
DNA (1092bp) protein (364aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRA8_MESAW
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX36781.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
spermidine/putrescine-binding periplasmic protein
SCNpilot_cont_1000_bf_scaffold_56_curated_21
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17445..18290
DNA (846bp) protein (282aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAK3_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CCV13480.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_1000_bf_scaffold_56_curated_22
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18293..19075
DNA (783bp) protein (261aa)
UPI0003CF84DB related cluster n=1 Tax=unknown RepID=UPI0003CF84DB
ABC transporter permease {ECO:0000313|EMBL:ESY69665.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_1000_bf_scaffold_56_curated_23
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19072..20139
DNA (1068bp) protein (356aa)
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLE9_MESCW
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADV12700.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_56_curated_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20143..20901
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TLE8_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV12699.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_56_curated_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20911..21921)
DNA (1011bp) protein (337aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FKX3_9RHIZ
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCV13474.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_1000_bf_scaffold_56_curated_26
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22460..23233
DNA (774bp) protein (258aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
NAD(+) kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
UPI0003CE968F related cluster n=1 Tax=unknown RepID=UPI0003CE968F
SCNpilot_cont_1000_bf_scaffold_56_curated_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23424..24944
DNA (1521bp) protein (507aa)
Probable ATP-dependent RNA helicase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98NA7_RHILO
RNA helicase {ECO:0000313|EMBL:CDX31340.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ATP-dependent RNA helicase rbh
Displaying items 1-30 of 241 in total

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