ggKbase home page

SCNpilot_cont_1000_bf_scaffold_426_curated

Search features with annotation key words

Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_426_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27..1916)
DNA (1890bp) protein (630aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
Putative 4-hydroxyphenylpyruvate dioxygenase protein {ECO:0000313|EMBL:CCF01278.1}; EC=1.13.11.27 {ECO:0000313|EMBL:CCF01278.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AJP6_RHIFH
SCNpilot_cont_1000_bf_scaffold_426_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1938..2390)
DNA (453bp) protein (151aa)
aroQ1; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
3-dehydroquinate dehydratase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W143_RHISN
SCNpilot_cont_1000_bf_scaffold_426_curated_3
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2458..3663)
DNA (1206bp) protein (402aa)
aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GV84_9RHIZ
Glutamate-1-semialdehyde aminotransferase {ECO:0000313|EMBL:ESZ02191.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
SCNpilot_cont_1000_bf_scaffold_426_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3707..4993)
DNA (1287bp) protein (429aa)
C4-dicarboxylate transport system n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JHY8_AGRRK
C4-dicarboxylate transport system
C4-dicarboxylate transport system {ECO:0000313|EMBL:ACM29530.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4990..5502)
DNA (513bp) protein (171aa)
C4-dicarboxylate transport system n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHY7_AGRRK
C4-dicarboxylate transport system
C4-dicarboxylate transport system {ECO:0000313|EMBL:ACM29529.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5514..6506)
DNA (993bp) protein (331aa)
C4-dicarboxylate transport system n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JHY6_AGRRK
C4-dicarboxylate transport system
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KEA08151.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_1000_bf_scaffold_426_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6661..7569
DNA (909bp) protein (303aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2CS77_9RHIZ
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAJ93659.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
transcriptional regulator protein
SCNpilot_cont_1000_bf_scaffold_426_curated_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7626..8036)
DNA (411bp) protein (137aa)
UPI0003CF3D21 related cluster n=1 Tax=unknown RepID=UPI0003CF3D21
Uncharacterized protein {ECO:0000313|EMBL:ESW94179.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_426_curated_9
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8002..8352)
DNA (351bp) protein (117aa)
Bleomycin resistance protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HCQ8_PSEAC
Bleomycin resistance protein {ECO:0000313|EMBL:KDP89138.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Glyoxalase/bleomycin resistance protein/dioxygenase; K06996
SCNpilot_cont_1000_bf_scaffold_426_curated_10
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8431..9219)
DNA (789bp) protein (263aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ERH9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJK18162.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
AraC family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_426_curated_11
Endozoicomonas montiporae, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9233..10276)
DNA (1044bp) protein (348aa)
Transcriptional regulator n=1 Tax=Clostridium ultunense Esp RepID=M1YWP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEQ11478.1}; TaxID=1027273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas montiporae.;"
regulatory protein TetR
SCNpilot_cont_1000_bf_scaffold_426_curated_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10434..11675
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000376756D
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADB53311.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

11675..12694
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003728671
inner-membrane translocator; K11956 neutral amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADB53310.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

12691..13617
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037C679A
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADB53309.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

13614..14402
DNA (789bp) protein (263aa)
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC13_CONWI
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADB53308.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_16
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

14399..15124
DNA (726bp) protein (242aa)
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBB5_CONWI
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADB53307.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_17
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15117..15536
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR50_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIF33202.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
phenylacetic acid degradation-like protein
SCNpilot_cont_1000_bf_scaffold_426_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15558..16184
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LM46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF18849.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_426_curated_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16221..17789
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000363F87F
AMP-dependent synthetase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_1000_bf_scaffold_426_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17893..18906
DNA (1014bp) protein (338aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase superfamily, zinc-containing n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J102_RHOP2
Alcohol dehydrogenase superfamily, zinc-containing {ECO:0000313|EMBL:ABD05858.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_21
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18943..19392)
DNA (450bp) protein (150aa)
Mll2487 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IA8_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX31133.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_cont_1000_bf_scaffold_426_curated_22
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19803..21029
DNA (1227bp) protein (409aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
UPI0003CEA1D8 related cluster n=1 Tax=unknown RepID=UPI0003CEA1D8
SCNpilot_cont_1000_bf_scaffold_426_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21127..22395)
DNA (1269bp) protein (423aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FH85_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:CDX43081.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
arabinose efflux permease family protein
SCNpilot_cont_1000_bf_scaffold_426_curated_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22710..23645)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEI7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV15697.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein; K07054
SCNpilot_cont_1000_bf_scaffold_426_curated_25
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23906..24808
DNA (903bp) protein (301aa)
Putative polysaccharide deacetylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TI84_9RHIZ
Putative polysaccharide deacetylase {ECO:0000313|EMBL:ESR25713.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
polysaccharide deacetylase protein
SCNpilot_cont_1000_bf_scaffold_426_curated_26
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24844..25032)
DNA (189bp) protein (63aa)
Mll2495 protein n=2 Tax=Rhizobium loti RepID=Q98IA2_RHILO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AID31917.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_cont_1000_bf_scaffold_426_curated_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25137..25511)
DNA (375bp) protein (125aa)
UPI0003CE302D related cluster n=1 Tax=unknown RepID=UPI0003CE302D
DNA-binding transcriptional regulator of mntH {ECO:0000313|EMBL:CDX43090.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
iron dependent repressor; K11924 DtxR family transcriptional regulator, manganese transport regulator
SCNpilot_cont_1000_bf_scaffold_426_curated_28
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25947..27314
DNA (1368bp) protein (456aa)
Divalent metal cation transporter MntH n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHE0_MESAW
natural resistance-associated macrophage protein metal ion transporter NRAMP
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_29
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27383..28207
DNA (825bp) protein (275aa)
Probable O-methyltransferase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I98_RHILO
O-methyltransferase rbh
Probable O-methyltransferase {ECO:0000313|EMBL:BAB49618.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_1000_bf_scaffold_426_curated_30
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28236..29114)
DNA (879bp) protein (293aa)
UPI0003CEC992 related cluster n=1 Tax=unknown RepID=UPI0003CEC992
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDX51734.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator
Displaying items 1-30 of 138 in total

View Taxonomy