ggKbase home page

SCNpilot_cont_1000_bf_scaffold_375_curated_43

Organism: scnpilot_dereplicated_Mesorhizobium_1

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(39798..40043)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=13 Tax=Mesorhizobium RepID=HFQ_RHILO similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 9.30e-38
RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 2.90e-38
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 1.30e-37

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. LNHC232B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 246
ATGGCGGAACGATCGCAAAATCTTCAGGACCTGTTCCTGAATTCAGTTCGCAAGAGCAAGAACCCACTCACCATTTTTCTCATCAACGGCGTAAAGCTGACCGGCGTGGTCACTTCGTTTGACAATTTCTGCGTCCTGCTGCGCCGAGACGGCCACTCCCAGCTCGTCTACAAGCACGCCATTTCCACGATCATGCCGAGCCAGCCGGTTCAGATGTTCGATGGCGAGGAAAGCCAGGGCGCCTGA
PROTEIN sequence
Length: 82
MAERSQNLQDLFLNSVRKSKNPLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPSQPVQMFDGEESQGA*