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SCNpilot_cont_1000_bf_scaffold_375_curated

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_375_curated_1
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1168
DNA (1167bp) protein (389aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
UPI0003CEB7B3 related cluster n=1 Tax=unknown RepID=UPI0003CEB7B3
ABC transporter {ECO:0000313|EMBL:ESY64743.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_cont_1000_bf_scaffold_375_curated_2
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1165..2295
DNA (1131bp) protein (377aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8T5_MESCW
inner-membrane translocator; K02057 simple sugar transport system permease protein
ABC-type uncharacterized transport system, permease component {ECO:0000313|EMBL:AGB46477.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_1000_bf_scaffold_375_curated_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2295..3215
DNA (921bp) protein (307aa)
Permease protein of sugar ABC transporter n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FBH2_9RHIZ
Permease protein of sugar ABC transporter {ECO:0000313|EMBL:CCV13661.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
putative ABC-type transport system, permease component
SCNpilot_cont_1000_bf_scaffold_375_curated_4
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3266..4333
DNA (1068bp) protein (356aa)
UPI0003CEE201 related cluster n=1 Tax=unknown RepID=UPI0003CEE201
hypothetical protein; K02058 simple sugar transport system substrate-binding protein rbh
Putative ABC-type transport system, periplasmic component/surface lipoprotein {ECO:0000313|EMBL:ETA73044.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
SCNpilot_cont_1000_bf_scaffold_375_curated_5
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4413..5726)
DNA (1314bp) protein (438aa)
MiaB-like tRNA modifying protein YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=765698 species="Bacteria; Pro
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8T1_MESCW
SCNpilot_cont_1000_bf_scaffold_375_curated_6
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5880..6533)
DNA (654bp) protein (218aa)
Membrane protein n=3 Tax=Mesorhizobium RepID=V7EVJ1_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESZ56210.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
integral membrane protein TerC
SCNpilot_cont_1000_bf_scaffold_375_curated_7
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6697..7089)
DNA (393bp) protein (131aa)
UPI0003CF3ED8 related cluster n=1 Tax=unknown RepID=UPI0003CF3ED8
Signal peptide protein {ECO:0000313|EMBL:ESX62421.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_375_curated_8
unknown

Not on your lists

7411..7506
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_375_curated_9
unknown

Not on your lists

7652..7789
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_375_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8227..8460)
DNA (234bp) protein (78aa)
integrase n=1 Tax=Thiobacillus denitrificans RepID=UPI000362CAEC
phage integrase
Phage integrase {ECO:0000313|EMBL:ABE62812.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_375_curated_trna_1
unknown

Not on your lists

comp(8638..8724)
DNA (87bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_375_curated_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8985..9422)
DNA (438bp) protein (146aa)
UPI0003CDD4F1 related cluster n=1 Tax=unknown RepID=UPI0003CDD4F1
Glyoxalase {ECO:0000313|EMBL:ESY83079.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_1000_bf_scaffold_375_curated_12
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9762..10964
DNA (1203bp) protein (401aa)
UPI0003CFFC77 related cluster n=1 Tax=unknown RepID=UPI0003CFFC77
Rare lipoprotein A {ECO:0000313|EMBL:ESZ24838.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
rare lipoprotein A; K03642 rare lipoprotein A rbh
SCNpilot_cont_1000_bf_scaffold_375_curated_13
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11188..12351
DNA (1164bp) protein (388aa)
penicillin binding protein; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Penicillin binding protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98MV3_RHILO
Penicillin binding protein {ECO:0000313|EMBL:BAB48010.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_1000_bf_scaffold_375_curated_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12513..13205
DNA (693bp) protein (231aa)
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Thymidylate kinase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ESB2_9RHIZ
SCNpilot_cont_1000_bf_scaffold_375_curated_15
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13202..14254
DNA (1053bp) protein (351aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III, delta prime subunit n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F8P7_9RHIZ
DNA polymerase III subunit delta {ECO:0000313|EMBL:ESY80751.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_1000_bf_scaffold_375_curated_16
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14340..15890
DNA (1551bp) protein (517aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Methionine--tRNA ligase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCP9_MESOW
SCNpilot_cont_1000_bf_scaffold_375_curated_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15890..16690
DNA (801bp) protein (267aa)
LuxR family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037FE8CA
Putative metallodependent hydrolase {ECO:0000313|EMBL:CDX16408.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hydrolase, TatD family
SCNpilot_cont_1000_bf_scaffold_375_curated_18
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16687..17508
DNA (822bp) protein (274aa)
UPI0003CFCDAA related cluster n=1 Tax=unknown RepID=UPI0003CFCDAA
PhnP {ECO:0000313|EMBL:ESZ68323.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
hydrolase; K06167 PhnP protein
SCNpilot_cont_1000_bf_scaffold_375_curated_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17881..18447)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A2FB7A
Uncharacterized protein {ECO:0000313|EMBL:CDX18587.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_375_curated_20
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18665..19573
DNA (909bp) protein (303aa)
arginase/agmatinase/formiminoglutamase; K01480 agmatinase [EC:3.5.3.11]
Arginase/agmatinase/formiminoglutamase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNG8_MESCW
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:ADV12850.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_375_curated_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19789..20628
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WF6_RHOFD
hypothetical protein
Tax=CG_Rhodof_02
SCNpilot_cont_1000_bf_scaffold_375_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20642..21784
DNA (1143bp) protein (381aa)
(S)-mandelate dehydrogenase {ECO:0000313|EMBL:CDX15764.1}; EC=1.1.99.31 {ECO:0000313|EMBL:CDX15764.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K15054 (S)-mandelate dehydrogenase [EC:1.1.99.31]
UPI0003D01D23 related cluster n=1 Tax=unknown RepID=UPI0003D01D23
SCNpilot_cont_1000_bf_scaffold_375_curated_23
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21836..22204)
DNA (369bp) protein (123aa)
Putative peroxiredoxin n=1 Tax=Rhizobium sp. CF122 RepID=J2RDN7_9RHIZ
Putative peroxiredoxin {ECO:0000313|EMBL:EJL50837.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
DsrE family protein
SCNpilot_cont_1000_bf_scaffold_375_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22275..23270
DNA (996bp) protein (332aa)
AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000381670A
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACS56873.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_1000_bf_scaffold_375_curated_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23277..23687)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A9F20
Uncharacterized protein {ECO:0000313|EMBL:CDX18591.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_375_curated_26
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23800..24879)
DNA (1080bp) protein (360aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037720F9
SCNpilot_cont_1000_bf_scaffold_375_curated_27
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24991..25671
DNA (681bp) protein (227aa)
UPI0003CE05C6 related cluster n=1 Tax=unknown RepID=UPI0003CE05C6
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:ESY81297.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_1000_bf_scaffold_375_curated_28
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25765..26076)
DNA (312bp) protein (104aa)
UPI0003CE7CAB related cluster n=1 Tax=unknown RepID=UPI0003CE7CAB
MocE {ECO:0000313|EMBL:ESY90334.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
Rieske (2Fe-2S) domain-containing protein; K05710 dioxygenase ferredoxin subunit
SCNpilot_cont_1000_bf_scaffold_375_curated_29
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26185..27132)
DNA (948bp) protein (316aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YL41_9RHIZ
Putative rhizopine-binding protein {ECO:0000313|EMBL:CDX20400.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
sugar ABC transporter substrate-binding protein; K02058 simple sugar transport system substrate-binding protein
Displaying items 1-30 of 58 in total

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