ggKbase home page

SCNpilot_expt_1000_bf_scaffold_759_curated

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_759_curated_1
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..288)
DNA (288bp) protein (96aa)
ABC-type phosphate transport system n=1 Tax=Arthrobacter sp. JBH1 RepID=I1Y9I2_9MICC
Integrase core domain protein {ECO:0000313|EMBL:KJL37372.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
protein
SCNpilot_expt_1000_bf_scaffold_759_curated_2
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(606..1559)
DNA (954bp) protein (318aa)
Oleate hydratase {ECO:0000313|EMBL:KJL36994.1}; EC=4.2.1.53 {ECO:0000313|EMBL:KJL36994.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
Uncharacterized protein n=1 Tax=Nocardia asteroides NBRC 15531 RepID=U5ED80_NOCAS
mycA; Myosin-crossreactive antigen family protein
SCNpilot_expt_1000_bf_scaffold_759_curated_3
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1724..2581)
DNA (858bp) protein (286aa)
Putative 3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:KJL36993.1}; EC=1.1.1.157 {ECO:0000313|EMBL:KJL36993.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Rhodococcus sp. P14 RepID=UPI00029A5F99
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein
SCNpilot_expt_1000_bf_scaffold_759_curated_4
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2616..3269)
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=2 Tax=Rhodococcus RepID=UPI00029A5FB7
Bacterial regulatory protein, tetR family {ECO:0000313|EMBL:KJL36992.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_759_curated_5
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3436..3810)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6XDH6_9MICO
Helix-turn-helix domain protein {ECO:0000313|EMBL:KJL39017.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
excisionase family DNA binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_759_curated_6
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4396..5325)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI000381EF12
permease of the drug/metabolite transporter (DMT) superfamily; K15269 probable blue pigment (indigoidine) exporter
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:BAJ75878.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_1000_bf_scaffold_759_curated_7
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5356..5841
DNA (486bp) protein (162aa)
transcriptional regulator n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B328B7
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKX66987.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_759_curated_8
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5916..7397)
DNA (1482bp) protein (494aa)
transporter n=1 Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI00035EDA19
Permease family protein {ECO:0000313|EMBL:CCQ48255.1}; TaxID=861266 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.;"
sulfate transporter
SCNpilot_expt_1000_bf_scaffold_759_curated_9
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7469..7897)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037BE2F2
Uncharacterized protein {ECO:0000313|EMBL:KJL22799.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_759_curated_10
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7930..8865)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F677AA
Diacylglycerol kinase {ECO:0000313|EMBL:KDA05582.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
diacylglycerol kinase catalytic subunit; K07029
SCNpilot_expt_1000_bf_scaffold_759_curated_11
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8887..11280)
DNA (2394bp) protein (798aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glutamine synthetase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K424_9MICO
SCNpilot_expt_1000_bf_scaffold_759_curated_12
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11571..11837)
DNA (267bp) protein (89aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C7141
SCNpilot_expt_1000_bf_scaffold_759_curated_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11847..13184)
DNA (1338bp) protein (446aa)
Putative glutamine synthetase 2 {ECO:0000313|EMBL:KJL35485.1}; EC=6.3.1.2 {ECO:0000313|EMBL:KJL35485.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glnA; glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
glutamine synthetase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346D0E3
SCNpilot_expt_1000_bf_scaffold_759_curated_14
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13187..13411)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003153C3D
Uncharacterized protein {ECO:0000313|EMBL:KJL24680.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_759_curated_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13479..14225
DNA (747bp) protein (249aa)
Polyphosphate glucokinase {ECO:0000313|EMBL:KJL25611.1}; EC=2.7.1.63 {ECO:0000313|EMBL:KJL25611.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glk; transcriptional regulator/sugar kinase; K00886 polyphosphate glucokinase [EC:2.7.1.63]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034AD078
SCNpilot_expt_1000_bf_scaffold_759_curated_16
unknown

Not on your lists

comp(14297..14596)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_759_curated_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15129..16778)
DNA (1650bp) protein (550aa)
DNA polymerase I, thermostable {ECO:0000313|EMBL:KJL25610.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KJL25610.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains; K02335 DNA polymerase I [EC:2.7.7.7]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K428_9MICO
SCNpilot_expt_1000_bf_scaffold_759_curated_18
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16921..17655)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E6E2E2
DNA-binding protein {ECO:0000313|EMBL:KDA05576.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
Zn-ribbon protein, possibly nucleic acid-binding; K07164
SCNpilot_expt_1000_bf_scaffold_759_curated_19
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17749..18588
DNA (840bp) protein (280aa)
2,5-diketo-D-gluconic acid reductase B {ECO:0000313|EMBL:KJL19665.1}; EC=1.1.1.274 {ECO:0000313|EMBL:KJL19665.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGN1_9MICO
2,5-diketo-D-gluconate reductase
SCNpilot_expt_1000_bf_scaffold_759_curated_20
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18585..19175
DNA (591bp) protein (197aa)
membrane protein n=1 Tax=Agromyces italicus RepID=UPI0003B41992
Uncharacterized protein {ECO:0000313|EMBL:ERK70493.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
S-isoprenylcysteine methyltransferase-like protein
SCNpilot_expt_1000_bf_scaffold_759_curated_21
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

19159..19494
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000373DD14
integral membrane protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_759_curated_22
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19500..20591
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GMY9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01388.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_759_curated_23
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20711..21757
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00035F8783
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89030.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_759_curated_24
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21754..21960
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A7EB5
(Fe-S) protein {ECO:0000313|EMBL:KDA06972.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
CDGSH-type iron sulfur-containing protein
SCNpilot_expt_1000_bf_scaffold_759_curated_25
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21970..22527)
DNA (558bp) protein (186aa)
RibD domain protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CZA3_MYXXD
riboflavin biosynthesis protein RibD domain-containing protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
SCNpilot_expt_1000_bf_scaffold_759_curated_26
unknown

Not on your lists

22687..22923
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_759_curated_27
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23085..23969
DNA (885bp) protein (295aa)
Site-specific tyrosine recombinase XerD n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P7I7_LEIXC
Integrase {ECO:0000313|EMBL:KDA05570.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
site-specific tyrosine recombinase XerD
SCNpilot_expt_1000_bf_scaffold_759_curated_28
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24337..24636
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL33441.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_759_curated_29
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24640..25551)
DNA (912bp) protein (304aa)
integrase n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B702DD
Phage integrase family protein {ECO:0000313|EMBL:CDZ92313.1}; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
phage integrase family protein
SCNpilot_expt_1000_bf_scaffold_759_curated_30
Arthrobacter sp. FB24, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25816..26487
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. (strain FB24) RepID=A0AWI5_ARTS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK05755.1}; TaxID=290399 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. (strain FB24).;"
Displaying items 1-30 of 169 in total

View Taxonomy