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SCNpilot_expt_1000_bf_scaffold_862_curated

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_862_curated_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

141..1487
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00035ED651
Acetoin dehydrogenase operon transcriptional activator AcoR {ECO:0000313|EMBL:KJL24663.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transcriptional activator of acetoin/glycerol metabolism
SCNpilot_expt_1000_bf_scaffold_862_curated_2
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1594..3141
DNA (1548bp) protein (516aa)
EPTC-inducible aldehyde dehydrogenase {ECO:0000313|EMBL:KJL29950.1}; EC=1.2.1.3 {ECO:0000313|EMBL:KJL29950.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
NAD-dependent aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349BB2B
SCNpilot_expt_1000_bf_scaffold_862_curated_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3208..3609
DNA (402bp) protein (134aa)
UDP-glucose 4-epimerase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003466997
Uncharacterized protein {ECO:0000313|EMBL:KJL29949.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein; K09959 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_4
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3620..4846)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1M7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL34195.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_5
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4843..5811)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KB95_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM73129.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_6
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5918..6124
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL34174.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_862_curated_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6121..6561
DNA (441bp) protein (147aa)
Ribonuclease VapC21 {ECO:0000313|EMBL:KJL34175.1}; EC=3.1.-.- {ECO:0000313|EMBL:KJL34175.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Ribonuclease VapC n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0VFD1_MYCVA
SCNpilot_expt_1000_bf_scaffold_862_curated_8
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6662..7639
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344BD72
Contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92958.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_862_curated_9
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7636..8979
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K2A1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA05114.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_10
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9059..10300
DNA (1242bp) protein (414aa)
N-acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:KJL22399.1}; EC=2.7.7.43 {ECO:0000313|EMBL:KJL22399.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
acylneuraminate cytidylyltransferase; K00983 N-acylneuraminate cytidylyltransferase [EC:2.7.7.43]
transferase n=1 Tax=Humibacter albus RepID=UPI0003B405AD
SCNpilot_expt_1000_bf_scaffold_862_curated_11
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10544..11416
DNA (873bp) protein (291aa)
N,N'-diacetyllegionaminic acid synthase {ECO:0000313|EMBL:KJQ54017.1}; EC=2.5.1.101 {ECO:0000313|EMBL:KJQ54017.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
N-acetylneuraminate synthase; K01654 N-acetylneuraminate synthase [EC:2.5.1.56]
N-acetylneuraminate synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003619242
SCNpilot_expt_1000_bf_scaffold_862_curated_12
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11413..12738
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378D294
Uncharacterized protein {ECO:0000313|EMBL:EZP27715.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13214..13582
DNA (369bp) protein (123aa)
30S ribosomal protein S6 n=1 Tax=Microbacterium barkeri RepID=UPI0002D77BE2
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpsF; ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_862_curated_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13588..14094
DNA (507bp) protein (169aa)
Single-stranded DNA-binding protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBQ9_9MICO
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_862_curated_15
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14156..14410
DNA (255bp) protein (85aa)
30S ribosomal protein S18 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1N9_9MICO
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
rpsR; ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_expt_1000_bf_scaffold_862_curated_16
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14422..14874
DNA (453bp) protein (151aa)
50S ribosomal protein L9 n=1 Tax=Microbacterium barkeri RepID=UPI0002DBC6FC
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rplI; ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_862_curated_17
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14937..15449)
DNA (513bp) protein (171aa)
Putative transcriptional regulator id=7720310 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
LacI family transcriptional regulator {ECO:0000313|EMBL:EYT54549.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_862_curated_18
unknown

Not on your lists

comp(16084..17055)
DNA (972bp) protein (324aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_862_curated_19
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17626..19122
DNA (1497bp) protein (499aa)
Replicative DNA helicase {ECO:0000313|EMBL:KJQ52638.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KJQ52638.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
dnaB; replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
DNA helicase n=1 Tax=Microbacterium barkeri RepID=UPI00037F6BCB
SCNpilot_expt_1000_bf_scaffold_862_curated_20
Gordonia hirsuta, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19218..19841
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00030E03E3
Uncharacterized protein {ECO:0000313|EMBL:GAC57579.1}; TaxID=1121927 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia hirsuta DSM 44140 = NBRC 16056.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_21
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19852..20376
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036A903B
Uncharacterized protein {ECO:0000313|EMBL:KJL25869.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
SCNpilot_expt_1000_bf_scaffold_862_curated_22
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20414..21187)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003828197
Hydrolase {ECO:0000313|EMBL:KHK99607.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_862_curated_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21278..21928)
DNA (651bp) protein (217aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000313|EMBL:KJL31382.1}; EC=5.4.2.11 {ECO:0000313|EMBL:KJL31382.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6WVD2_9MICO
SCNpilot_expt_1000_bf_scaffold_862_curated_24
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21963..22874)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003483895
Molecular chaperone DnaJ {ECO:0000313|EMBL:KDA05094.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
molecular chaperone DnaJ
SCNpilot_expt_1000_bf_scaffold_862_curated_25
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23223..23402
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Brevibacterium casei S18 RepID=K9AFI7_9MICO
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88967.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
flagellar biosynthesis pathway, component FlhA
SCNpilot_expt_1000_bf_scaffold_862_curated_26
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23415..24215)
DNA (801bp) protein (267aa)
Non-heme bromoperoxidase BPO-A2 {ECO:0000313|EMBL:KJL17313.1}; EC=1.11.1.- {ECO:0000313|EMBL:KJL17313.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Alpha/beta hydrolase fold containing protein n=2 Tax=Microbacterium RepID=H8E6P1_9MICO
hydrolase or acyltransferase
SCNpilot_expt_1000_bf_scaffold_862_curated_27
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24299..25189)
DNA (891bp) protein (297aa)
putative topoisomerase IB; K03168 DNA topoisomerase I [EC:5.99.1.2] id=7719970 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Eukaryotic DNA topoisomerase I, catalytic core {ECO:0000313|EMBL:KJL24901.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_862_curated_28
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25463..26947
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CA6D0
Multidrug export protein MepA {ECO:0000313|EMBL:KJL33891.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
MATE efflux family protein
SCNpilot_expt_1000_bf_scaffold_862_curated_29
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

27083..27523
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349CC83
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_862_curated_30
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27549..29273)
DNA (1725bp) protein (575aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:KJL30260.1}; EC=6.2.1.1 {ECO:0000313|EMBL:KJL30260.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F9BC82
Displaying items 1-30 of 111 in total

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