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SCNpilot_expt_1000_bf_scaffold_518_curated_8

Organism: scnpilot_dereplicated_Microbacterium_3

near complete RP 46 / 55 MC: 2 BSCG 45 / 51 MC: 2 ASCG 12 / 38
Location: comp(6668..7507)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Nocardiopsis halophila RepID=UPI00034BFDB7 similarity UNIREF
DB: UNIREF100
  • Identity: 55.6
  • Coverage: 268.0
  • Bit_score: 242
  • Evalue 5.40e-61
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 53.0
  • Coverage: 283.0
  • Bit_score: 237
  • Evalue 7.10e-60
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADH66108.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.0
  • Coverage: 283.0
  • Bit_score: 237
  • Evalue 3.20e-59

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Taxonomy

Nocardiopsis dassonvillei → Nocardiopsis → Streptosporangiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 840
ATGCCGATGACCGAGCCCGACGAGATCTTCGAGACGCACCGCAGATATCTGACTGCGGTCGCCTACCGGATGCTCGGCTCGCACGCCGATGCGGAGGACGCGGTGCAGGAGGCCTGGATCAGGGCCTCCGGCACCGCCGCCGAGGCGGATGACCCGAGGGCATGGCTGACGAAGACGGTGAGCCGCATCTGCCTGGATCAGCTCCGGGCACGCGGGCGGCGTCAGGAGAACCCCCTCGATCTGCTTCCCGACGTCGAACGCGCACCGGCCGACGCCGACCCGACGGTACGCGCCGAGAGCGCCGACCGGGTCGGCTACGCGCTGATGCTGGTGCTCGATCAGCTGACCCCCGACGAGCGTCTCGCCTATGTGCTGCACGACGTGTTCGGACTGTCCTTCGACGAGGTCGCGCCCATCGTGGAGCGCACGCCGCCCGCCGCGCGCAAGCTGGCGAGCCGCGCGCGCGACCGGGTGCGCGGCGCCGCACCACGGGATGCCGATCAGGCGGCGACCCGCGCTCAGCGCCGCGCCGTGGTCGACGCCTTCCTCGCGGCCGCACGGGACGGCGACTTCGCGGGGCTGCTGGCCGTGCTGCACCCCGACGTCGAGTTCCACCTCGATCAGGGCGCCGACGGCATCCGGATCGTCCGCGGTGCGGAGAAGGTGGCGGCGTCCGCCGCCGCGTTCCACCGGTACGCCTCGGGCTACGACTTCGAGATCGTGGAACTGGCCGACGGATTCGCCGTCGTCGCGATCGACGACGGCGTCCCGGTCTCGCTGCTCTCCTTCAGCTCGGAGGGCGAGCGCATCACGGTGATGGAGACCCGCGAACTGCGCTGA
PROTEIN sequence
Length: 280
MPMTEPDEIFETHRRYLTAVAYRMLGSHADAEDAVQEAWIRASGTAAEADDPRAWLTKTVSRICLDQLRARGRRQENPLDLLPDVERAPADADPTVRAESADRVGYALMLVLDQLTPDERLAYVLHDVFGLSFDEVAPIVERTPPAARKLASRARDRVRGAAPRDADQAATRAQRRAVVDAFLAAARDGDFAGLLAVLHPDVEFHLDQGADGIRIVRGAEKVAASAAAFHRYASGYDFEIVELADGFAVVAIDDGVPVSLLSFSSEGERITVMETRELR*