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SCNpilot_expt_1000_bf_scaffold_518_curated

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Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_518_curated_1
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

268..1350
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031448D5
Uncharacterized protein {ECO:0000313|EMBL:KJQ56120.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_518_curated_2
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1222..1707)
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KJQ56121.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_3
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1704..2249)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003153A61
Uncharacterized protein {ECO:0000313|EMBL:KJQ56122.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_4
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2258..2911)
DNA (654bp) protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:KJQ56123.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_5
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3046..3693
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L6H3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM86836.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
asparagine synthase
SCNpilot_expt_1000_bf_scaffold_518_curated_6
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3868..4818)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034811B1
HTH-type transcriptional regulator GltC {ECO:0000313|EMBL:KJL21340.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_518_curated_7
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4881..6620
DNA (1740bp) protein (580aa)
succinate dehydrogenase flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Microbacterium barkeri RepID=UPI0002F88512
Succinate dehydrogenase flavoprotein subunit {ECO:0000313|EMBL:KJL19169.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_8
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6668..7507)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Nocardiopsis halophila RepID=UPI00034BFDB7
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADH66108.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
SCNpilot_expt_1000_bf_scaffold_518_curated_9
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7538..8029)
DNA (492bp) protein (164aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
UPI0003D6A517 related cluster n=1 Tax=unknown RepID=UPI0003D6A517
alkylhydroperoxidase
SCNpilot_expt_1000_bf_scaffold_518_curated_10
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9517..9627
DNA (111bp) protein (37aa)
L-serine dehydratase 2 {ECO:0000313|EMBL:KJL32239.1}; EC=4.3.1.17 {ECO:0000313|EMBL:KJL32239.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
sdaA; L-serine deaminase; K01752 L-serine dehydratase [EC:4.3.1.17]
serine dehydratase n=1 Tax=Microbacterium barkeri RepID=UPI000313310C
SCNpilot_expt_1000_bf_scaffold_518_curated_11
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9671..10459
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L6G1_9MICO
Putative ABC transporter ATP-binding protein YbhF {ECO:0000313|EMBL:KJL19840.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ABC transporter family protein
SCNpilot_expt_1000_bf_scaffold_518_curated_12
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10456..11184
DNA (729bp) protein (243aa)
Antibiotic ABC transporter permease n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L8B9_9MICO
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ABC-2 type transporter family protein
SCNpilot_expt_1000_bf_scaffold_518_curated_13
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11212..11433
DNA (222bp) protein (74aa)
antitoxin n=1 Tax=Brevibacterium sp. JC43 RepID=UPI00035D2E47
hypothetical protein; K07746 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAT89543.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
SCNpilot_expt_1000_bf_scaffold_518_curated_14
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11430..11720
DNA (291bp) protein (97aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RSZ2_LEIAQ
Toxin ParE1 {ECO:0000313|EMBL:KJQ54215.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_518_curated_15
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11721..11975)
DNA (255bp) protein (85aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L3E5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM86824.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_16
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11972..13996)
DNA (2025bp) protein (675aa)
ATP-dependent RNA helicase HrpB {ECO:0000313|EMBL:KJL29076.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KJL29076.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L3E5_9MICO
SCNpilot_expt_1000_bf_scaffold_518_curated_17
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14248..15180)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Streptomyces sp. PsTaAH-124 RepID=UPI00036A4464
Esterase {ECO:0000313|EMBL:EYT81960.1}; TaxID=1470557 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
alpha/beta hydrolase fold-3 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_518_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15173..16162)
DNA (990bp) protein (330aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUN7_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR77888.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsC; ribose/xylose/arabinose/galactoside ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_518_curated_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16159..17679)
DNA (1521bp) protein (507aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
rbsA; RbsA (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose transport ATP-binding protein rbsa n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1WEZ3_ANEAE
SCNpilot_expt_1000_bf_scaffold_518_curated_20
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17676..18671)
DNA (996bp) protein (332aa)
Putative substrate-binding component of ABC transporter n=1 Tax=Streptomyces scabies (strain 87.22) RepID=C9YUG2_STRSW
substrate-binding component of ABC transporter; K10552 fructose transport system substrate-binding protein
Putative substrate-binding component of ABC transporter {ECO:0000313|EMBL:CBG67734.1}; TaxID=680198 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
SCNpilot_expt_1000_bf_scaffold_518_curated_21
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18793..20019)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Demetria terragena RepID=UPI0003647324
ROK family protein
ROK family protein {ECO:0000313|EMBL:ACU71069.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
SCNpilot_expt_1000_bf_scaffold_518_curated_22
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20016..22292)
DNA (2277bp) protein (759aa)
glycosyl hydrolase family 98 putative carbohydrate binding module n=1 Tax=Streptomyces chartreusis RepID=UPI000262D5FF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK26925.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_23
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23140..23307)
DNA (168bp) protein (56aa)
putative ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003791DE0
DNA polymerase LigD, ligase domain protein {ECO:0000313|EMBL:ERK72704.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_24
Corynebacterium variabile, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23719..24717)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) RepID=G0HHR6_CORVD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK37786.1}; TaxID=858619 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131); (Corynebacterium mooreparkense).;"
SCNpilot_expt_1000_bf_scaffold_518_curated_25
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24980..25324)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FLK6_MYCSM
Uncharacterized protein {ECO:0000313|EMBL:ELQ91432.1}; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_518_curated_26
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25549..25692)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L3E5_9MICO
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95014.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_27
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25744..26274)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL21122.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
SCNpilot_expt_1000_bf_scaffold_518_curated_28
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26484..28103)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KT22_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM86823.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein; K07192 flotillin
SCNpilot_expt_1000_bf_scaffold_518_curated_29
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28211..28639)
DNA (429bp) protein (143aa)
transcriptional regulator n=1 Tax=Microbacterium barkeri RepID=UPI00031CCA50
Transcriptional regulator {ECO:0000313|EMBL:EYT58053.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_518_curated_30
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28888..29781
DNA (894bp) protein (298aa)
aminoglycoside phosphotransferase n=1 Tax=Streptomyces acidiscabies RepID=UPI000289BC0B
Acetyltransferase {ECO:0000313|EMBL:KFF99394.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
aminoglycoside phosphotransferase; K06979
Displaying items 1-30 of 140 in total

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