ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1442_curated_11

Organism: scnpilot_dereplicated_Microbacterium_3

near complete RP 46 / 55 MC: 2 BSCG 45 / 51 MC: 2 ASCG 12 / 38
Location: 12341..13588

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K413_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 87.8
  • Coverage: 417.0
  • Bit_score: 698
  • Evalue 5.30e-198
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 416.0
  • Bit_score: 717
  • Evalue 1.20e-203
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 81.1
  • Coverage: 435.0
  • Bit_score: 662
  • Evalue 1.00e-187

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microbacterium sp. MEJ108Y → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1248
GTGACTCCTGCCACGACCAAGAAGACCCGGACGACCACGAAGAAGACGGCCGCCGCAGAGGTCGAGACCCCCGAGGTCGAAGAGGCCGCAGAGGCGGCTGCTGCGAAGGCGCCCGCGAAGAAGGCCGCCGCCAAGAAGGCTCCCGCCAAGCGTGCGTCCAAGAAGAAGGACGAGGCTCCCGAGGTCGACGACGAGACCGTCGACGCCGCGGACGCGGACGACGAGGAGAACGACAAGAAGCCGGCGTTCACGGAGCCGCTGCCCACCGGCGCGATCGTGATCTCGTCCGCCGACGAGGACGACGTCCCGGTCTACTCGACCCAGATCACCGGCGCCACGGCCGACCCGGTCAAGGACTACCTGAAGCAGATCGGAAAGGTCGCGCTGCTGAACGCGGCCGAAGAGGTCGAGCTCGCCATGCGCATCGAGGCCGGCCTGTTCGCCGAGGAGAAGCTGTCGACGATGTCGGCCGCCGAGAAGTCCAGCCAGCTCGGGCTCGACCTGCAGTGGGTCGCCCGCGACGGTCAGCGCGCCAAGAGCCACCTGCTCGGCGCCAACCTGCGTCTGGTCGTCTCGCTGGCCAAGCGCTACACCGGCCGCGGCATGCAGTTCCTGGATCTCATCCAGGAGGGCAACCTGGGCCTCATCCGCGCCGTCGAGAAGTTCGATTACACCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCCATCACCCGCGCAATGGCCGACCAGGCCCGCACCATCCGCATCCCGGTGCACATGGTCGAGGTCATCAACAAGCTCGCCCGCGTTCAGCGCCAGATGCTGCAGGACCTGGGTCGCGAGCCCACGCCCGAGGAGCTCTCCCGCGAGCTGGACATGACGCCCGAGAAGGTCGTCGAGGTGCAGAAGTACGGCCGTGAGCCGATCTCGCTGCACACGCCCCTCGGCGAGGACGGCGACAGCGAGTTCGGTGACCTGATCGAGGACACCGAGGCCGTCGTGCCCGCCGACGCCGTGGGCTTCACGATGCTGCAGCGTCAGCTCGAGCAGCTCCTGGACTCCCTGTCCGAGCGCGAGGCCGGCGTGATCCGGATGCGCTTCGGCCTGGGCGACGGCCAGCCGAAGACGCTCGACCAGATCGGCGACACCTTCGGCGTGACGCGCGAGCGCATCCGCCAGATCGAGTCGAAGACCATGGCCAAGCTCCGTCACCCGAGCCGGTCGCAGTCGCTGCGGGACTACCTCGAATGA
PROTEIN sequence
Length: 416
VTPATTKKTRTTTKKTAAAEVETPEVEEAAEAAAAKAPAKKAAAKKAPAKRASKKKDEAPEVDDETVDAADADDEENDKKPAFTEPLPTGAIVISSADEDDVPVYSTQITGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEEKLSTMSAAEKSSQLGLDLQWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELSRELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQRQLEQLLDSLSEREAGVIRMRFGLGDGQPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQSLRDYLE*