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SCNpilot_expt_1000_bf_scaffold_1442_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1442_curated_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(430..1854)
DNA (1425bp) protein (475aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glnA; glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=Microbacterium sp. 4N2-2 RepID=K7SFA5_9MICO
SCNpilot_expt_1000_bf_scaffold_1442_curated_2
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1972..2388
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F5B041
Uncharacterized protein {ECO:0000313|EMBL:KDA05584.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_3
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2452..2931)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EE8B7E
Uncharacterized protein {ECO:0000313|EMBL:KJQ54673.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_4
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3292..4122
DNA (831bp) protein (277aa)
30S ribosomal protein S6 modification protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIP9_9MICO
Ribosomal protein S6 modification protein {ECO:0000313|EMBL:KJL25622.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
30S ribosomal protein S6 modification protein; K05844 ribosomal protein S6 modification protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_5
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(4187..4897)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002FDC3A3
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1442_curated_6
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5023..6426
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037AF15C
Contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89772.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_1442_curated_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6450..8213)
DNA (1764bp) protein (588aa)
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000313|EMBL:KJL19647.1}; EC=2.3.1.12 {ECO:0000313|EMBL:KJL19647.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
dihydrolipoamide acetyltransferase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CEF4F
SCNpilot_expt_1000_bf_scaffold_1442_curated_8
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8281..9654)
DNA (1374bp) protein (458aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGL3_9MICO
SCNpilot_expt_1000_bf_scaffold_1442_curated_9
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9654..11129)
DNA (1476bp) protein (492aa)
leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003453AF2
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
SCNpilot_expt_1000_bf_scaffold_1442_curated_10
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11242..12174
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003496EA2
PAC2 family protein {ECO:0000313|EMBL:KJL17568.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_11
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12341..13588
DNA (1248bp) protein (416aa)
RNA polymerase sigma factor SigA n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K413_9MICO
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_1442_curated_12
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13585..14904
DNA (1320bp) protein (440aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000313|EMBL:KJL35681.1}; EC=6.3.2.9 {ECO:0000313|EMBL:KJL35681.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
ligase n=1 Tax=Humibacter albus RepID=UPI0003B71B76
ligase
SCNpilot_expt_1000_bf_scaffold_1442_curated_13
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14901..15674
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Curtobacterium flaccumfaciens RepID=UPI00036D23B1
Cobyric acid synthase {ECO:0000313|EMBL:KJL35682.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
putative glutamine amidotransferase; K07009
SCNpilot_expt_1000_bf_scaffold_1442_curated_14
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16005..16373
DNA (369bp) protein (123aa)
Alanine racemase {ECO:0000313|EMBL:KJL27826.1}; EC=5.1.1.1 {ECO:0000313|EMBL:KJL27826.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034ADAEE
alanine racemase
SCNpilot_expt_1000_bf_scaffold_1442_curated_15
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16370..17404
DNA (1035bp) protein (345aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346441C
alanine racemase
SCNpilot_expt_1000_bf_scaffold_1442_curated_16
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(17408..17617)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003163D6D
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1442_curated_17
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

17688..19685
DNA (1998bp) protein (666aa)
gyrB; type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA topoisomerase IV subunit B n=1 Tax=Microbacterium barkeri RepID=UPI0002ECA41C
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1442_curated_18
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19687..19884
DNA (198bp) protein (66aa)
DNA gyrase subunit B {ECO:0000313|EMBL:CDK00739.1}; EC=5.99.1.3 {ECO:0000313|EMBL:CDK00739.1};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
gyrB; type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA topoisomerase IV subunit B n=1 Tax=Microbacterium sp. TS-1 RepID=U2YR90_9MICO
SCNpilot_expt_1000_bf_scaffold_1442_curated_19
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20359..22611
DNA (2253bp) protein (751aa)
val start codon n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5D77
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_expt_1000_bf_scaffold_1442_curated_20
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22577..23833
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000310315B
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:KJL27831.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_21
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23865..24890)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D704A4
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91951.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_22
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25096..25389
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K404_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL19633.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_23
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25481..25960)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037A3961
Uncharacterized protein {ECO:0000313|EMBL:KJL19632.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_24
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25964..26413
DNA (450bp) protein (150aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
dut; dUTPase; K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XJT0_9MICO
SCNpilot_expt_1000_bf_scaffold_1442_curated_25
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26410..26997
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGJ9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM74589.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_26
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27402..27695
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000374A1AB
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91956.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1442_curated_27
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27846..30680
DNA (2835bp) protein (945aa)
Aconitate hydratase {ECO:0000313|EMBL:KJL17589.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KJL17589.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Microbacterium barkeri RepID=UPI000300BF8A
SCNpilot_expt_1000_bf_scaffold_1442_curated_28
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

30866..32809
DNA (1944bp) protein (648aa)
dxs; deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Microbacterium barkeri RepID=UPI00031E9B0A
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1442_curated_29
unknown

Not on your lists

comp(32813..33427)
DNA (615bp) protein (205aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1442_curated_30
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33424..34092)
DNA (669bp) protein (223aa)
TetR family transcriptional regulator n=1 Tax=Agromyces subbeticus RepID=UPI0003B5F9E1
HTH-type transcriptional regulator TtgR {ECO:0000313|EMBL:KJL31653.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
TetR family transcriptional regulator
Displaying items 1-30 of 37 in total

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