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scnpilot_expt_750_p_scaffold_479_curated

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Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_479_curated_1
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

181..501
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MUF9_9MICO
Multicopper oxidase type 3 {ECO:0000313|EMBL:CDK02001.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
putative multicopper oxidase
scnpilot_expt_750_p_scaffold_479_curated_2
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(807..2243)
DNA (1437bp) protein (479aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
glnA; glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] rbh
glutamine synthetase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B388E2
scnpilot_expt_750_p_scaffold_479_curated_3
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2354..3070)
DNA (717bp) protein (239aa)
Integral membrane protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4ALR6_9ACTN
Integral membrane protein {ECO:0000313|EMBL:EAR23757.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_4
unknown

Not on your lists

3213..4358
DNA (1146bp) protein (382aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_479_curated_5
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4368..5738)
DNA (1371bp) protein (457aa)
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000313|EMBL:KJL19647.1}; EC=2.3.1.12 {ECO:0000313|EMBL:KJL19647.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
sucB; dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
dihydrolipoamide succinyltransferase n=1 Tax=Agromyces italicus RepID=UPI0003B3CFF5
scnpilot_expt_750_p_scaffold_479_curated_6
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5768..7141)
DNA (1374bp) protein (458aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] id=7722049 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
scnpilot_expt_750_p_scaffold_479_curated_7
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7193..8701)
DNA (1509bp) protein (503aa)
pep; leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1] id=7722050 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
pepA; leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1]
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
scnpilot_expt_750_p_scaffold_479_curated_8
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8805..9731
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI0002894674
Uncharacterized protein {ECO:0000313|EMBL:EAR23752.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9728..11083
DNA (1356bp) protein (452aa)
putative MFS permease id=7722052 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERK69662.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
putative MFS permease
scnpilot_expt_750_p_scaffold_479_curated_10
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11181..12767
DNA (1587bp) protein (529aa)
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); K03086 RNA polymerase primary sigma factor id=7722053 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
sigA; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
scnpilot_expt_750_p_scaffold_479_curated_11
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12775..14076
DNA (1302bp) protein (434aa)
Putative UDP-N-acetylmuramyl tripeptide synthase {ECO:0000313|EMBL:CAN01699.1}; EC=6.3.2.- {ECO:0000313|EMBL:CAN01699.1};; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
ligase n=1 Tax=Agromyces subbeticus RepID=UPI0003B648EE
murX; putative UDP-N-acetylmuramyl tripeptide synthase
scnpilot_expt_750_p_scaffold_479_curated_12
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14073..14825
DNA (753bp) protein (251aa)
CobB/CobQ-like protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T694_LEIAQ
CobB/CobQ-like protein {ECO:0000313|EMBL:ERK72963.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
cobyric acid synthase
scnpilot_expt_750_p_scaffold_479_curated_13
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14834..15835)
DNA (1002bp) protein (334aa)
hypothetical protein id=7722057 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putative hexapeptide transferase family protein {ECO:0000313|EMBL:EPR76100.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_14
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15868..16098)
DNA (231bp) protein (77aa)
hypothetical protein id=7722058 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EYT63201.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_15
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16258..16836
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AAF6_PSEF1
Strain MEJ086 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIP96267.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
hypothetical protein; K06966
scnpilot_expt_750_p_scaffold_479_curated_16
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16886..18967
DNA (2082bp) protein (694aa)
gyrB; DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] id=7722059 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
DNA topoisomerase IV subunit B
Uncharacterized protein {ECO:0000313|EMBL:AGW41204.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_479_curated_17
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19058..19624
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BEZ7_SANKS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ21293.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
scnpilot_expt_750_p_scaffold_479_curated_18
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19635..20177)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037F9869
Emopamil binding protein {ECO:0000313|EMBL:KJL35673.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_19
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20174..22633)
DNA (2460bp) protein (820aa)
DNA topoisomerase IV subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=7722062 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
gyrA; DNA topoisomerase IV subunit A; K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
scnpilot_expt_750_p_scaffold_479_curated_20
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22646..23779
DNA (1134bp) protein (378aa)
hypothetical protein id=7722063 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW41206.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_479_curated_21
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23787..24785)
DNA (999bp) protein (333aa)
DNA-binding protein id=7722064 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPR76095.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
DNA-binding protein
scnpilot_expt_750_p_scaffold_479_curated_22
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24986..25288
DNA (303bp) protein (101aa)
hypothetical protein id=7722065 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Strain 70137, complete genome {ECO:0000313|EMBL:AJM77649.1}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_23
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25310..25768)
DNA (459bp) protein (153aa)
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU04267.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
hypothetical protein id=7722066 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_24
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25811..26254
DNA (444bp) protein (148aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
dutA; hypothetical protein; K01520 dUTP pyrophosphatase [EC:3.6.1.23] id=7722067 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
scnpilot_expt_750_p_scaffold_479_curated_25
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26251..26877
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B6D63D
Uncharacterized protein {ECO:0000313|EMBL:CDK00732.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_26
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26874..27566
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3B5D8
Integral membrane protein {ECO:0000313|EMBL:KJC65393.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_479_curated_27
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27576..30413
DNA (2838bp) protein (946aa)
Aconitate hydratase {ECO:0000313|EMBL:KJL19628.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KJL19628.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Microbacterium barkeri RepID=UPI000300BF8A
scnpilot_expt_750_p_scaffold_479_curated_28
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30532..31134
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Streptomyces sp. ATexAB-D23 RepID=UPI00036B3976
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEI47637.1}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
scnpilot_expt_750_p_scaffold_479_curated_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31160..33112
DNA (1953bp) protein (651aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] id=7722072 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
1-deoxy-D-xylulose-5-phosphate synthase
scnpilot_expt_750_p_scaffold_479_curated_30
unknown

Not on your lists

comp(33090..33653)
DNA (564bp) protein (188aa)

This feature has no annotations

Displaying items 1-30 of 113 in total

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