ggKbase home page

scnpilot_expt_750_p_scaffold_753_curated

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_753_curated_1
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..379)
DNA (378bp) protein (126aa)
protein phosphatase; K01090 protein phosphatase [EC:3.1.3.16]
protein phosphatase n=1 Tax=Humibacter albus RepID=UPI0003B6BFFE
Protein phosphatase {ECO:0000313|EMBL:AAT88129.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
scnpilot_expt_750_p_scaffold_753_curated_2
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(383..886)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289265D
FHA domain containing protein {ECO:0000313|EMBL:EPR75065.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
secreted protein
scnpilot_expt_750_p_scaffold_753_curated_3
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(883..1578)
DNA (696bp) protein (232aa)
Putative uncharacterized protein id=7720393 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR26183.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_4
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1772..2107
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003089FE3
Uncharacterized protein {ECO:0000313|EMBL:KJL37342.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical membrane protein
scnpilot_expt_750_p_scaffold_753_curated_5
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2191..2889
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0S0S0_RHOSR
Uncharacterized protein {ECO:0000313|EMBL:CDK01229.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_6
unknown

Not on your lists

comp(2920..3456)
DNA (537bp) protein (179aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_753_curated_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3486..4940)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L1B3_9MICO
Di-/tripeptide transporter {ECO:0000313|EMBL:KJL25825.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
putative peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
scnpilot_expt_750_p_scaffold_753_curated_8
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5014..5409
DNA (396bp) protein (132aa)
Uncharacterized protein id=7720391 bin=CNBR_ACT species=Gordonia hirsuta genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EYT55975.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
scnpilot_expt_750_p_scaffold_753_curated_9
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5429..6097)
DNA (669bp) protein (223aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
Endonuclease NucS id=7720383 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein; K07503 hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_10
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6111..6599
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 114MFTsu3.1 RepID=UPI00036C415F
Glyoxalase-like domain protein {ECO:0000313|EMBL:KJL35976.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein; K07032
scnpilot_expt_750_p_scaffold_753_curated_11
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6645..7001
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Frankia sp. CN3 RepID=G6H703_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EWM64750.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_12
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6980..8206)
DNA (1227bp) protein (409aa)
MFS transporter permease n=1 Tax=Curtobacterium sp. B18 RepID=UPI0003450F5F
Uncharacterized protein {ECO:0000313|EMBL:KFF59398.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
major facilitator superfamily protein
scnpilot_expt_750_p_scaffold_753_curated_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8249..8551)
DNA (303bp) protein (101aa)
XRE family transcriptional regulator n=1 Tax=Humibacter albus RepID=UPI0003B40E04
Anaerobic benzoate catabolism transcriptional regulator {ECO:0000313|EMBL:KJL36459.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8644..10302
DNA (1659bp) protein (553aa)
DNA (Cytosine-5-)-methyltransferase n=3 Tax=Propionibacterium RepID=E4CRH4_PROAA
DNA methylase N-4/N-6 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_expt_750_p_scaffold_753_curated_15
Streptomyces xiamenensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10299..12740
DNA (2442bp) protein (814aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5]
hypothetical protein n=1 Tax=Longispora albida RepID=UPI00036DDDCB
Type iii restriction res subunit {ECO:0000313|EMBL:AKG45492.1}; TaxID=408015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces xiamenensis.;"
scnpilot_expt_750_p_scaffold_753_curated_16
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12766..14745
DNA (1980bp) protein (660aa)
metallopeptidase; K07386 putative endopeptidase [EC:3.4.24.-] rbh
peptidase M13 n=1 Tax=Agromyces subbeticus RepID=UPI0003B62EEA
Metallopeptidase {ECO:0000313|EMBL:EPR75049.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
scnpilot_expt_750_p_scaffold_753_curated_17
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14844..15134
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BCS2_9MICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE74511.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_expt_750_p_scaffold_753_curated_18
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15131..15559
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI00036BA138
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40390.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_753_curated_19
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15561..15794
DNA (234bp) protein (78aa)
Putative uncharacterized protein id=7720362 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR26215.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
scnpilot_expt_750_p_scaffold_753_curated_20
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15813..16235)
DNA (423bp) protein (141aa)
epimerase n=1 Tax=Microbacteriaceae RepID=UPI00035CAB15
Putative membrane protein {ECO:0000313|EMBL:CCI54370.1}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
hypothetical protein; K08987 putative membrane protein
scnpilot_expt_750_p_scaffold_753_curated_21
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16244..17269)
DNA (1026bp) protein (342aa)
pfkA; hypothetical protein; K00850 6-phosphofructokinase [EC:2.7.1.11]
6-phosphofructokinase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF18_9ACTN
6-phosphofructokinase {ECO:0000313|EMBL:EAR26219.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
scnpilot_expt_750_p_scaffold_753_curated_22
Bacillus sp. EGD-AK10, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17346..17732
DNA (387bp) protein (129aa)
Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. EGD-AK10 RepID=U2A505_9BACI
Uncharacterized protein {ECO:0000313|EMBL:ERI40007.1}; Flags: Fragment;; TaxID=1386080 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. EGD-AK10.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_23
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17801..18988
DNA (1188bp) protein (396aa)
membrane protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289B227
Putative integral membrane protein {ECO:0000313|EMBL:EAR26275.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
low temperature requirement A protein (LtrA) family protein
scnpilot_expt_750_p_scaffold_753_curated_24
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19009..20139
DNA (1131bp) protein (377aa)
Acyl-CoA dehydrogenase id=7720331 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EAR26289.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
acyl-CoA dehydrogenase
scnpilot_expt_750_p_scaffold_753_curated_25
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20189..20623
DNA (435bp) protein (145aa)
Putative MarR-family protein n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RE93_CLAMS
MarR-family protein
Putative MarR-family protein {ECO:0000313|EMBL:CAQ00811.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
scnpilot_expt_750_p_scaffold_753_curated_26
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20632..21996
DNA (1365bp) protein (455aa)
MFS transporter n=1 Tax=Microbacterium yannicii RepID=UPI000315D27F
Permease of the major facilitator superfamily {ECO:0000313|EMBL:GAD33995.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
permease of the major facilitator superfamily
scnpilot_expt_750_p_scaffold_753_curated_27
Leucobacter komagatae, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21998..23227)
DNA (1230bp) protein (410aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
Putative l-lactate dehydrogenase id=7720323 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Leucobacter komagatae strain VKM ST2845 L_komagatae_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIP51553.1}; TaxID=55969 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter komagatae.;"
scnpilot_expt_750_p_scaffold_753_curated_28
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23241..23903)
DNA (663bp) protein (221aa)
GntR family transcriptional regulator n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288246A
Transcriptional regulator, GntR family protein {ECO:0000313|EMBL:EAR26298.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
GntR family transcriptional regulator
scnpilot_expt_750_p_scaffold_753_curated_29
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24008..25699
DNA (1692bp) protein (564aa)
Putative uncharacterized protein id=7720289 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:AJW78104.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_753_curated_30
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25693..26622
DNA (930bp) protein (310aa)
Putative uncharacterized protein id=7720288 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDP91227.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
Displaying items 1-30 of 78 in total

View Taxonomy