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scnpilot_expt_750_p_scaffold_2291_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2291_curated_1
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..280
DNA (279bp) protein (93aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
pheT; phenylalanyl-tRNA synthetase beta subunit; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Microbacterium sp. 11MF RepID=UPI00037ABA06
scnpilot_expt_750_p_scaffold_2291_curated_2
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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383..1030
DNA (648bp) protein (216aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378D2A
NADH-flavin reductase; K07118
NADH-flavin reductase {ECO:0000313|EMBL:AEG45183.1}; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
scnpilot_expt_750_p_scaffold_2291_curated_3
unknown

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1062..1532
DNA (471bp) protein (157aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2291_curated_4
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1529..2500
DNA (972bp) protein (324aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NA48_MICTS
permease of the drug/metabolite transporter (DMT) superfamily; K15269 probable blue pigment (indigoidine) exporter
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:BAJ75878.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
scnpilot_expt_750_p_scaffold_2291_curated_5
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2436..3782)
DNA (1347bp) protein (449aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
argininosuccinate synthase n=1 Tax=Agromyces subbeticus RepID=UPI0003B2ECA5
argininosuccinate synthase
scnpilot_expt_750_p_scaffold_2291_curated_6
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3898..4290
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R5L4_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK70540.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
scnpilot_expt_750_p_scaffold_2291_curated_7
Gordonia namibiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4314..5000)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B5B93F
Uncharacterized protein {ECO:0000313|EMBL:GAC01857.1}; TaxID=1208314 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia namibiensis NBRC 108229.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2291_curated_8
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5332..6378
DNA (1047bp) protein (349aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Leifsonia sp. 109 RepID=UPI000368B17B
scnpilot_expt_750_p_scaffold_2291_curated_9
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6375..7541
DNA (1167bp) protein (389aa)
argJ; N-acetylglutamate synthase; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Microbacterium sp. TS-1 RepID=U2XJZ0_9MICO
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
scnpilot_expt_750_p_scaffold_2291_curated_10
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7557..8474
DNA (918bp) protein (306aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
argB; acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
acetylglutamate kinase n=1 Tax=Agromyces italicus RepID=UPI0003B43BE3
scnpilot_expt_750_p_scaffold_2291_curated_11
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8471..9655
DNA (1185bp) protein (395aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Acetylornithine aminotransferase id=7719146 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
acetylornithine aminotransferase
scnpilot_expt_750_p_scaffold_2291_curated_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9652..10584
DNA (933bp) protein (311aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
argF; ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3]
ornithine carbamoyltransferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036AAB29
scnpilot_expt_750_p_scaffold_2291_curated_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10581..11999
DNA (1419bp) protein (473aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase id=7719144 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_expt_750_p_scaffold_2291_curated_14
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12014..12658
DNA (645bp) protein (215aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21]
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BW12_BEUC1
scnpilot_expt_750_p_scaffold_2291_curated_15
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12668..13597
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LNW0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG64089.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
AraC family transcriptional regulator
scnpilot_expt_750_p_scaffold_2291_curated_16

Not on your lists

13659..14669
DNA (1011bp) protein (337aa)
aliphatic nitrilase (EC:3.5.5.7); K01502 aliphatic nitrilase [EC:3.5.5.7]
hypothetical protein, partial n=1 Tax=Nocardiopsis alkaliphila RepID=UPI0003756071
Uncharacterized protein {ECO:0000313|EMBL:KGA13716.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
scnpilot_expt_750_p_scaffold_2291_curated_17
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14867..16021
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PQW3_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ40899.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
scnpilot_expt_750_p_scaffold_2291_curated_18
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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16122..17273
DNA (1152bp) protein (384aa)
Inner-membrane translocator n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IUJ5_FRASU
inner-membrane translocator; K10440 ribose transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADP83680.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_expt_750_p_scaffold_2291_curated_19
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17294..18589
DNA (1296bp) protein (432aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase id=7719138 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Displaying 19 items

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