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scnpilot_expt_750_p_scaffold_818_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_818_curated_1
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

109..1530
DNA (1422bp) protein (474aa)
mfs transporter id=7719287 bin=CNBR_ACT species=Rhodococcus equi genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Antiseptic resistance protein {ECO:0000313|EMBL:KJL38838.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
major facilitator superfamily multidrug resistance protein
scnpilot_expt_750_p_scaffold_818_curated_2
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1593..2033)
DNA (441bp) protein (147aa)
ribosome-binding factor A n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B734E6
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
scnpilot_expt_750_p_scaffold_818_curated_3
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2082..4790)
DNA (2709bp) protein (903aa)
translation initiation factor IF-2 n=1 Tax=Agromyces italicus RepID=UPI0003B4A25D
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
infB; translation initiation factor 2 (IF-2; GTPase); K02519 translation initiation factor IF-2
scnpilot_expt_750_p_scaffold_818_curated_4
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4935..5186)
DNA (252bp) protein (84aa)
nucleotide-binding protein n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B4A40E
Uncharacterized protein {ECO:0000313|EMBL:CDZ88718.1}; TaxID=1830 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
putative nucleic-acid-binding protein implicated in transcription termination
scnpilot_expt_750_p_scaffold_818_curated_5
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5218..6219)
DNA (1002bp) protein (334aa)
Transcription elongation factor NusA n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BBU1_9MICO
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_expt_750_p_scaffold_818_curated_6
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6308..7180
DNA (873bp) protein (291aa)
NADH:ubiquinone oxidoreductase subunit 4 (Chain M) id=7719295 bin=CNBR_ACT species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
NADH:ubiquinone oxidoreductase subunit 4 (Chain M) {ECO:0000313|EMBL:CDK01391.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
NADH:ubiquinone oxidoreductase subunit 4 (chain M)
scnpilot_expt_750_p_scaffold_818_curated_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(7216..8988)
DNA (1773bp) protein (591aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] rbh
prolyl-tRNA synthetase n=1 Tax=Agromyces subbeticus RepID=UPI0003B75018
scnpilot_expt_750_p_scaffold_818_curated_8
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9042..10460)
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B58FF4
Uncharacterized protein {ECO:0000313|EMBL:KJC62864.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_818_curated_9
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10513..11118)
DNA (606bp) protein (202aa)
PadR family transcripitonal regulator n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YAV0_9MICC
SPG23_c17, whole genome shotgun sequence {ECO:0000313|EMBL:KIS27552.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
PadR family transcriptional regulator
scnpilot_expt_750_p_scaffold_818_curated_10
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11208..12347)
DNA (1140bp) protein (380aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
ispG; hypothetical protein; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MSV6_9MICO
scnpilot_expt_750_p_scaffold_818_curated_11
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12427..13740)
DNA (1314bp) protein (438aa)
peptidase n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288D093
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:EPR75989.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
zinc metalloprotease
scnpilot_expt_750_p_scaffold_818_curated_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13884..14240
DNA (357bp) protein (119aa)
hypothetical protein id=7719461 bin=CNBR_ACT species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
PadR family transcriptional regulator {ECO:0000313|EMBL:CDK01282.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
PadR-like family transcriptional regulator
scnpilot_expt_750_p_scaffold_818_curated_13
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14240..15649
DNA (1410bp) protein (470aa)
Putative uncharacterized protein n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FQX9_ISOV2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEG43864.1}; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
scnpilot_expt_750_p_scaffold_818_curated_14
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15661..16746)
DNA (1086bp) protein (362aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacteri
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Curtobacterium flaccumfaciens RepID=UPI00037FE830
1-deoxy-D-xylulose 5-phosphate reductoisomerase
scnpilot_expt_750_p_scaffold_818_curated_15
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16769..17764)
DNA (996bp) protein (332aa)
peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase id=7719306 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
scnpilot_expt_750_p_scaffold_818_curated_16
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17816..18283)
DNA (468bp) protein (156aa)
UPI000262B2E5 related cluster id=7719307 bin=CNBR_ACT species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACT organism_group=Actinobacteria
Peroxiredoxin {ECO:0000313|EMBL:KJC65508.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
redox protein, regulator of disulfide bond formation
scnpilot_expt_750_p_scaffold_818_curated_17
Segniliparus rugosus, Segniliparus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18284..19225)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Segniliparus rugosus ATCC BAA-974 RepID=U1N8Q0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ERG69213.1}; TaxID=679197 species="Bacteria; Actinobacteria; Corynebacteriales; Segniliparaceae; Segniliparus.;" source="Segniliparus rugosus ATCC BAA-974.;"
putative oxidoreductase
scnpilot_expt_750_p_scaffold_818_curated_18
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19248..20045)
DNA (798bp) protein (266aa)
Putative polyamine ABC-transporter integral membrane protein id=7719312 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EPR76275.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
polyamine ABC transporter inner membrane subunit; K11070 spermidine/putrescine transport system permease protein
scnpilot_expt_750_p_scaffold_818_curated_19
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20042..20965)
DNA (924bp) protein (308aa)
Putative polyamine ABC transporter permease protein id=7719313 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ABC transporter permease {ECO:0000313|EMBL:KJC65512.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
polyamine ABC transporter inner membrane subunit; K11071 spermidine/putrescine transport system permease protein
scnpilot_expt_750_p_scaffold_818_curated_20
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20965..22170)
DNA (1206bp) protein (402aa)
spermidine/putrescine ABC transporter ATPase; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] id=7719314 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
spermidine/putrescine ABC transporter ATPase; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC65513.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
scnpilot_expt_750_p_scaffold_818_curated_21
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22170..23360)
DNA (1191bp) protein (397aa)
Putative ABC-transporter polyamine-binding lipoprotein id=7719315 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putrescine ABC transporter putrescine-binding protein PotF {ECO:0000313|EMBL:EPR76278.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
extracellular solute-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
scnpilot_expt_750_p_scaffold_818_curated_22
unknown

Not on your lists

comp(23517..24077)
DNA (561bp) protein (187aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_818_curated_23
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24096..24617)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000370DD9C
Uncharacterized protein {ECO:0000313|EMBL:ERK70126.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_818_curated_24
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24638..25495)
DNA (858bp) protein (286aa)
Protein phosphatase id=7719324 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
protein phosphatase
Uncharacterized protein {ECO:0000313|EMBL:AGW41395.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_818_curated_25
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25547..26911)
DNA (1365bp) protein (455aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.-)
Aldehyde Dehydrogenase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E451_9MICO
Aldehyde Dehydrogenase {ECO:0000313|EMBL:EIC08538.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
scnpilot_expt_750_p_scaffold_818_curated_26
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27054..27515
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator n=1 Tax=Agromyces italicus RepID=UPI0003B56A01
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family protein {ECO:0000313|EMBL:ABK72995.1}; TaxID=246196 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155).;"
scnpilot_expt_750_p_scaffold_818_curated_27
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

27572..28960
DNA (1389bp) protein (463aa)
bioA; hypothetical protein; K00837 [EC:2.6.1.-] id=7719328 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_expt_750_p_scaffold_818_curated_28
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28960..30408
DNA (1449bp) protein (483aa)
FAD dependent oxidoreductase id=7719329 bin=CNBR_ACT species=unknown genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
FAD dependent oxidoreductase {ECO:0000313|EMBL:ERK70798.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
FAD dependent oxidoreductase
scnpilot_expt_750_p_scaffold_818_curated_29
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30425..31414)
DNA (990bp) protein (330aa)
F420-dependent oxidoreductase n=1 Tax=Nocardia sp. BMG111209 RepID=UPI00037E6A6F
Oxidoreductase {ECO:0000313|EMBL:GAM50300.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_818_curated_30
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31479..33458)
DNA (1980bp) protein (660aa)
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial id=7719332 bin=CNBR_ACT species=Arthrobacter sp. genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ABC transporter, transmembrane domain {ECO:0000313|EMBL:CCH15999.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
Displaying items 1-30 of 37 in total

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