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scnpilot_expt_750_p_scaffold_1366_curated

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1366_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..583
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003721511
Carbohydrate kinase {ECO:0000313|EMBL:KGE02199.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
PfkB family kinase
scnpilot_expt_750_p_scaffold_1366_curated_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

580..1491
DNA (912bp) protein (304aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000256|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000256|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000256|HAMAP-Rule:MF_01876};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IW4_MESSB
indigoidine synthase A like protein
scnpilot_expt_750_p_scaffold_1366_curated_3
Arthrobacter sp. Rue61a, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1480..2739)
DNA (1260bp) protein (420aa)
Putative major facilitator superfamily (MFS) transporter n=1 Tax=Arthrobacter sp. Rue61a RepID=J7LUQ3_9MICC
major facilitator superfamily transporter
Putative major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:AFR29132.1}; TaxID=1118963 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. Rue61a.;"
scnpilot_expt_750_p_scaffold_1366_curated_4
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2860..3339)
DNA (480bp) protein (160aa)
Putative Peroxiredoxin {ECO:0000313|EMBL:CDK01313.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDK01313.1};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B57C28
alkyl hydroperoxide reductase
scnpilot_expt_750_p_scaffold_1366_curated_5
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3349..4692)
DNA (1344bp) protein (448aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ97_PSEUX
Contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU04138.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
major facilitator superfamily protein
scnpilot_expt_750_p_scaffold_1366_curated_6
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4853..7582
DNA (2730bp) protein (910aa)
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] id=7722008 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] rbh
scnpilot_expt_750_p_scaffold_1366_curated_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7586..8770
DNA (1185bp) protein (395aa)
putative transcriptional regulator id=7722007 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:ERK70426.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein rbh
scnpilot_expt_750_p_scaffold_1366_curated_8
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8772..9791)
DNA (1020bp) protein (340aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
lipA; lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
radical SAM protein n=1 Tax=Agromyces italicus RepID=UPI0003B3B6B1
scnpilot_expt_750_p_scaffold_1366_curated_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9788..10432)
DNA (645bp) protein (215aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218471}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218470};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATC
lipB; octanoyltransferase (Lipoate-protein ligase B) (EC:2.3.1.181)
Octanoyltransferase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RCA0_LEIAQ
scnpilot_expt_750_p_scaffold_1366_curated_10
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10429..11784)
DNA (1356bp) protein (452aa)
Transporter, major facilitator family protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2TA75_LEIAQ
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERK71612.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
proline/betaine transporter
scnpilot_expt_750_p_scaffold_1366_curated_11
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12001..12924
DNA (924bp) protein (308aa)
fabD; malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
ACP S-malonyltransferase n=1 Tax=Agromyces italicus RepID=UPI0003B42314
ACP S-malonyltransferase {ECO:0000313|EMBL:EYT62089.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
scnpilot_expt_750_p_scaffold_1366_curated_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12921..13919
DNA (999bp) protein (333aa)
Beta-ketoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|SAAS:SAAS00048621}; EC=2.3.1.180 {ECO:0000256|SAAS:SAAS00048621};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-ACP synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003744167
scnpilot_expt_750_p_scaffold_1366_curated_13
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13951..14196
DNA (246bp) protein (82aa)
acyl carrier protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B7B07E
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
acpP; acyl carrier protein; K02078 acyl carrier protein
scnpilot_expt_750_p_scaffold_1366_curated_14
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14251..15492
DNA (1242bp) protein (414aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W372_9MICO
scnpilot_expt_750_p_scaffold_1366_curated_15
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15489..16007)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clavibacter michiganensis RepID=A5CRF8_CLAM3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE75541.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_expt_750_p_scaffold_1366_curated_16
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16142..16738)
DNA (597bp) protein (199aa)
PadR-like family transcriptional regulator id=7722000 bin=CNBR_ACT species=Arthrobacter globiformis genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
PadR family transcriptional regulator
Putative PadR-family transcriptional regulator {ECO:0000313|EMBL:CAQ01707.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
scnpilot_expt_750_p_scaffold_1366_curated_17
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16788..18200)
DNA (1413bp) protein (471aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=7721940 bin=CNBR_ACT species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFF60688.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein; K02004 putative ABC transport system permease protein
scnpilot_expt_750_p_scaffold_1366_curated_18
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18200..18958)
DNA (759bp) protein (253aa)
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein id=7721939 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Antimicrobial peptide ABC transporter permease protein {ECO:0000313|EMBL:GAD34918.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
peptide ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein
scnpilot_expt_750_p_scaffold_1366_curated_19
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19015..19704)
DNA (690bp) protein (230aa)
Response regulator n=1 Tax=Microbacterium sp. TS-1 RepID=U2XPW7_9MICO
Contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92650.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_expt_750_p_scaffold_1366_curated_20
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19701..20882)
DNA (1182bp) protein (394aa)
Putative signal transduction histidine kinase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XB44_9MICO
Histidine kinase {ECO:0000313|EMBL:KHK99629.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
histidine kinase
scnpilot_expt_750_p_scaffold_1366_curated_21
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20957..21403)
DNA (447bp) protein (149aa)
cupin n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3EBF8
Uncharacterized protein {ECO:0000313|EMBL:KJC65911.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
putative secreted cupin domain-containing protein
scnpilot_expt_750_p_scaffold_1366_curated_22
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22323..23015)
DNA (693bp) protein (231aa)
potassium transporter n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289E098
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:EPR76730.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
K+ transporter, NAD-binding component; K03499 trk system potassium uptake protein TrkA
scnpilot_expt_750_p_scaffold_1366_curated_23
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23008..24336)
DNA (1329bp) protein (443aa)
ATPase n=1 Tax=Agromyces subbeticus RepID=UPI0003B454F9
TrkH family potassium uptake protein {ECO:0000313|EMBL:EMY35114.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
TrkH family potassium uptake protein
scnpilot_expt_750_p_scaffold_1366_curated_24
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24435..25187
DNA (753bp) protein (251aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
Putative dihydropteroate synthase n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WBK4_9ACTO
putative dihydropteroate synthase
scnpilot_expt_750_p_scaffold_1366_curated_25
actinobacterium acMicro-1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25250..26383
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI000381FF62
Uncharacterized protein {ECO:0000313|EMBL:KGA07231.1}; TaxID=1504316 species="Bacteria; Actinobacteria.;" source="actinobacterium acMicro-1.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1366_curated_26
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26450..27964)
DNA (1515bp) protein (505aa)
iolA1; methylmalonate semialdehyde dehydrogenase IolA (EC:1.2.1.27)
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3FF89
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KJC64800.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
scnpilot_expt_750_p_scaffold_1366_curated_27
Arthrobacter sp. IHBB 11108, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28025..28552
DNA (528bp) protein (176aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1618207 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. IHBB 11108.;"
bacterioferritin n=1 Tax=Glaciibacter superstes RepID=UPI0003B3233C
ferritin family protein
scnpilot_expt_750_p_scaffold_1366_curated_28
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28549..30336)
DNA (1788bp) protein (596aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A7F2D
signal transduction histidine kinase
scnpilot_expt_750_p_scaffold_1366_curated_29
unknown

Not on your lists

comp(30333..30482)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_1366_curated_30
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30479..31978)
DNA (1500bp) protein (500aa)
Beta-monoglucosyldiacylglycerol synthase {ECO:0000313|EMBL:KJL22542.1}; EC=2.4.1.- {ECO:0000313|EMBL:KJL22542.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002FB340B
glucosaminyltransferase
Displaying items 1-30 of 34 in total

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