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scnpilot_expt_750_p_scaffold_1200_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1200_curated_1
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..612)
DNA (612bp) protein (204aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family id=7721097 bin=CNBR_ACT species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
sugar ABC transporter periplasmic components-like protein
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:ABK52824.1}; Flags: Precursor;; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
scnpilot_expt_750_p_scaffold_1200_curated_2
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(770..1645)
DNA (876bp) protein (292aa)
NmrA-like protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E8Y4_9ACTN
Nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:ESY04768.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
NAD(P)H--quinone oxidoreductase
scnpilot_expt_750_p_scaffold_1200_curated_3
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1652..2041)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003765124
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_expt_750_p_scaffold_1200_curated_4
actinobacterium acMicro-4, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2141..2863
DNA (723bp) protein (241aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Agrococcus pavilionensis RepID=UPI0003909B0A
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGA05752.1}; TaxID=1504317 species="Bacteria; Actinobacteria.;" source="actinobacterium acMicro-4.;"
ABC transporter ATP-binding protein; K10243 cellobiose transport system ATP-binding protein
scnpilot_expt_750_p_scaffold_1200_curated_5
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2923..4218
DNA (1296bp) protein (432aa)
Putative uncharacterized protein id=7721110 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40836.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_expt_750_p_scaffold_1200_curated_6
Arthrobacter sp. Rue61a, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4283..5389)
DNA (1107bp) protein (369aa)
permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B6AE06
permease
Putative permease {ECO:0000313|EMBL:AFR31001.1}; TaxID=1118963 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. Rue61a.;"
scnpilot_expt_750_p_scaffold_1200_curated_7
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5448..5810)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Corynebacterium lubricantis RepID=UPI000362C6A2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEE46936.1}; Flags: Precursor;; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
scnpilot_expt_750_p_scaffold_1200_curated_8
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5812..6213)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI0003449035
Membrane protein {ECO:0000313|EMBL:KDA04948.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1200_curated_9
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6259..6660)
DNA (402bp) protein (134aa)
membrane protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B2FB71
Uncharacterized protein {ECO:0000313|EMBL:KJF21546.1}; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1200_curated_10
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

6866..7501
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346FF6A
two-component system response regulator
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_expt_750_p_scaffold_1200_curated_11
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7506..8654
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A085E
Histidine kinase {ECO:0000313|EMBL:EYT60200.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
two-component system sensor kinase
scnpilot_expt_750_p_scaffold_1200_curated_12
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8642..9667
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YSX1_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD58720.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
scnpilot_expt_750_p_scaffold_1200_curated_13
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9682..10986)
DNA (1305bp) protein (435aa)
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000313|EMBL:EPR76366.1}; EC=2.3.1.12 {ECO:0000313|EMBL:EPR76366.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W197_9MICO
scnpilot_expt_750_p_scaffold_1200_curated_14
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10989..13181)
DNA (2193bp) protein (731aa)
2-oxoisovalerate dehydrogenase subunit beta; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI00036DEFDA
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:CDK00356.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
scnpilot_expt_750_p_scaffold_1200_curated_15
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13346..13873
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI0003797497
Uncharacterized protein {ECO:0000313|EMBL:EPR76364.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_expt_750_p_scaffold_1200_curated_16
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13878..14558
DNA (681bp) protein (227aa)
Regulatory protein GntR, HTH n=1 Tax=Leifsonia rubra CMS 76R RepID=S7XK24_9MICO
Regulatory protein GntR, HTH {ECO:0000313|EMBL:EPR76363.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
GntR family transcriptional regulator
scnpilot_expt_750_p_scaffold_1200_curated_17
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14642..15619
DNA (978bp) protein (326aa)
Aldo/keto reductase n=2 Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JZE9_STRHJ
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:AEY93354.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
scnpilot_expt_750_p_scaffold_1200_curated_18
Gordonia otitidis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15767..16864)
DNA (1098bp) protein (366aa)
alcohol dehydrogenase zinc-binding domain protein; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Putative alcohol dehydrogenase class III n=1 Tax=Gordonia otitidis NBRC 100426 RepID=H5TNL5_9ACTO
Putative alcohol dehydrogenase class III {ECO:0000313|EMBL:GAB35073.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
scnpilot_expt_750_p_scaffold_1200_curated_19
Arthrobacter gangotriensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16891..17910)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Saccharomonospora halophila RepID=UPI0003689A84
Uncharacterized protein {ECO:0000313|EMBL:EMQ99265.1}; TaxID=1276920 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter gangotriensis Lz1y.;"
hypothetical protein; K09936 hypothetical protein
scnpilot_expt_750_p_scaffold_1200_curated_20
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17907..18944)
DNA (1038bp) protein (346aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776, ECO:0000313|EMBL:AIY19284.1}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776, ECO:0000313|EMBL:AIY19284.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B8CCF
putative 2-dehydropantoate 2-reductase
scnpilot_expt_750_p_scaffold_1200_curated_21
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19084..19398
DNA (315bp) protein (105aa)
Stress responsive A/B Barrel Domain superfamily protein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8FFA6_MYCSM
Stress responsive alpha-beta barrel domain protein Dabb {ECO:0000313|EMBL:AJR18801.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein
scnpilot_expt_750_p_scaffold_1200_curated_22
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19395..20456
DNA (1062bp) protein (354aa)
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:CCG03396.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCG03396.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
butanediol dehydrogenase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003497536
alcohol dehydrogenase
scnpilot_expt_750_p_scaffold_1200_curated_23
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20494..21153)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C927C
XRE family transcriptional regulator {ECO:0000313|EMBL:KFZ78072.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
transcriptional regulator
scnpilot_expt_750_p_scaffold_1200_curated_24
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21273..22655
DNA (1383bp) protein (461aa)
Peptidase M24 {ECO:0000313|EMBL:CDJ99698.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
Peptidase M24 id=7721099 bin=CNBR_ACT species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
peptidase M24
scnpilot_expt_750_p_scaffold_1200_curated_25
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22652..23515
DNA (864bp) protein (288aa)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003451EFC
Uncharacterized protein {ECO:0000313|EMBL:CDJ99697.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
putative oxidoreductase
scnpilot_expt_750_p_scaffold_1200_curated_26
Rhodococcus sp. PN1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23490..24311)
DNA (822bp) protein (274aa)
LysR-type transcriptional regulator n=1 Tax=Rhodococcus sp. PN1 RepID=D0FZR1_9NOCA
LysR-type transcriptional regulator {ECO:0000313|EMBL:BAI48077.1}; TaxID=129133 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PN1.;"
LysR family transcriptional regulator
Displaying 26 items

View Taxonomy