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SCNpilot_expt_1000_bf_scaffold_858_curated

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_858_curated_1
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

258..1199
DNA (942bp) protein (314aa)
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase {ECO:0000313|EMBL:ACQ80118.1}; EC=2.3.1.61 {ECO:0000313|EMBL:ACQ80118.1};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4Z0_BEUC1
SCNpilot_expt_1000_bf_scaffold_858_curated_2
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1216..3828
DNA (2613bp) protein (871aa)
Integral membrane protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4Y5_BEUC1
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:ACQ80113.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_3
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3956..6805)
DNA (2850bp) protein (950aa)
iron-containing alcohol dehydrogenase; K04072 acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
Iron-containing alcohol dehydrogenase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5ULB2_CELFN
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_4
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7030..7443)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H3P7_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB10472.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_858_curated_5
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7457..8020)
DNA (564bp) protein (188aa)
Transcriptional regulator, TetR family n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LCN6_9ACTO
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCH21583.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
regulatory protein TetR
SCNpilot_expt_1000_bf_scaffold_858_curated_6
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(8013..8843)
DNA (831bp) protein (277aa)
hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B73C8C
alpha/beta hydrolase fold protein
Tax=RBG_16_RIF_CHLX_69_14_curated
SCNpilot_expt_1000_bf_scaffold_858_curated_7
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8886..9347)
DNA (462bp) protein (154aa)
RDD domain containing protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4Y4_BEUC1
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:ACQ80112.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_8
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9517..10941
DNA (1425bp) protein (475aa)
glutamine synthetase, type I (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Glutamine synthetase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4Y3_BEUC1
SCNpilot_expt_1000_bf_scaffold_858_curated_9
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(11025..12005)
DNA (981bp) protein (327aa)
Putative beta-N-acetylhexosaminidase n=1 Tax=Streptomyces sp. Tu6071 RepID=F3ZCN5_9ACTO
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
SCNpilot_expt_1000_bf_scaffold_858_curated_10
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12744..13820)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XQL1_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK34511.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_11
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13970..16882)
DNA (2913bp) protein (971aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
beta-galactosidase/beta-glucuronidase; K01190 beta-galactosidase [EC:3.2.1.23]
Beta-galactosidase/beta-glucuronidase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BF72_SANKS
SCNpilot_expt_1000_bf_scaffold_858_curated_12
unknown

Not on your lists

comp(17575..17787)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_858_curated_13
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18026..19999)
DNA (1974bp) protein (658aa)
UPI0003C7E197 related cluster n=1 Tax=unknown RepID=UPI0003C7E197
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFZ77779.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
SCNpilot_expt_1000_bf_scaffold_858_curated_14
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20490..21326
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BVH1_BEUC1
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACQ78411.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_15
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21323..22237
DNA (915bp) protein (305aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BVH0_BEUC1
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACQ78410.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_16
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23016..23723
DNA (708bp) protein (236aa)
Extracellular solute-binding protein family 1 n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BVG2_BEUC1
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ACQ78402.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_17
unknown

Not on your lists

comp(23803..24222)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_858_curated_18
unknown

Not on your lists

comp(24456..24749)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_858_curated_19
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25643..26308)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H309_CELFA
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGM01860.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_858_curated_20
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26305..27717)
DNA (1413bp) protein (471aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H310_CELFA
Histidine kinase {ECO:0000313|EMBL:KGM11538.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_858_curated_21
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27798..28220)
DNA (423bp) protein (141aa)
Organic hydroperoxide resistance protein ohrA n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI00037B5FD9
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:KHD96335.1}; TaxID=136273 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
ohr; organic hydroperoxide resistance protein
SCNpilot_expt_1000_bf_scaffold_858_curated_22
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28290..29261
DNA (972bp) protein (324aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Proline iminopeptidase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RAV5_LEIAQ
prolyl aminopeptidase
SCNpilot_expt_1000_bf_scaffold_858_curated_23
Corynebacterium ammoniagenes, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29309..30391
DNA (1083bp) protein (361aa)
L-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
Beta-eliminating lyase n=1 Tax=Corynebacterium ammoniagenes DSM 20306 RepID=D5NX45_CORAM
Beta-eliminating lyase {ECO:0000313|EMBL:EFG81601.1}; TaxID=649754 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium ammoniagenes DSM 20306.;"
SCNpilot_expt_1000_bf_scaffold_858_curated_24
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30440..33541)
DNA (3102bp) protein (1034aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
(Glutamate--ammonia-ligase) adenylyltransferase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4X8_BEUC1
SCNpilot_expt_1000_bf_scaffold_858_curated_25
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33554..34891)
DNA (1338bp) protein (446aa)
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase, type I n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4X7_BEUC1
Glutamine synthetase, type I {ECO:0000313|EMBL:ACQ80105.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_858_curated_26
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35051..35890
DNA (840bp) protein (280aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4X5_BEUC1
SCNpilot_expt_1000_bf_scaffold_858_curated_27
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35922..36155)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4X4_BEUC1
Uncharacterized protein {ECO:0000313|EMBL:KGM10854.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_858_curated_28
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36251..37036
DNA (786bp) protein (262aa)
ROK family protein (EC:2.7.1.63); K00886 polyphosphate glucokinase [EC:2.7.1.63]
ROK family protein {ECO:0000313|EMBL:ACQ80101.1}; EC=2.7.1.63 {ECO:0000313|EMBL:ACQ80101.1};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
ROK family protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C4X3_BEUC1
SCNpilot_expt_1000_bf_scaffold_858_curated_29
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37033..37500
DNA (468bp) protein (156aa)
Cytochrome bd-type quinol oxidase, subunit n=1 Tax=Microbacterium sp. TS-1 RepID=U2XRP8_9MICO
Cytochrome bd-type quinol oxidase, subunit {ECO:0000313|EMBL:GAD35675.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_1000_bf_scaffold_858_curated_30
unknown

Not on your lists

comp(37497..37679)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying items 1-30 of 70 in total

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