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SCNpilot_expt_1000_bf_scaffold_346_curated

Search features with annotation key words

Displaying items 1-30 of 243 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_346_curated_1
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..3344)
DNA (3342bp) protein (1114aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KZ88_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EWS81012.1}; Flags: Fragment;; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
cell surface protein
SCNpilot_expt_1000_bf_scaffold_346_curated_2
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3927..4334
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00035F79B4
AraC family transcriptional regulator {ECO:0000313|EMBL:KHK96240.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_346_curated_3
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4389..4799
DNA (411bp) protein (137aa)
lyase n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003820E40
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK36273.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_4
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4929..6095
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Streptomyces sp. AA1529 RepID=UPI0002ED6091
Bacterial low temperature requirement A protein (LtrA) {ECO:0000313|EMBL:KJL37141.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_346_curated_5
Dermacoccus sp. Ellin185, Dermacoccus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6184..7101
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Dermacoccus sp. Ellin185 RepID=E3B8P4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EFP58559.1}; TaxID=188626 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Dermacoccus.;" source="Dermacoccus sp. Ellin185.;"
hypothetical protein; K07454 putative restriction endonuclease
SCNpilot_expt_1000_bf_scaffold_346_curated_6
unknown

Not on your lists

7190..7309
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_346_curated_7
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7306..7800
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H6S1_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL88708.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_8
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7865..8299
DNA (435bp) protein (145aa)
rifampin ADP-ribosyl transferase n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003710A1C
arr; rifampin ADP-ribosyl transferase
Rifampin ADP-ribosyl transferase {ECO:0000313|EMBL:BAK37549.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_9
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8321..9757)
DNA (1437bp) protein (479aa)
xaa-Pro aminopeptidase (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:AAZ55779.1}; EC=3.4.11.9 {ECO:0000313|EMBL:AAZ55779.1};; TaxID=269800 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
Xaa-Pro aminopeptidase n=1 Tax=Thermobifida fusca (strain YX) RepID=Q47P40_THEFY
SCNpilot_expt_1000_bf_scaffold_346_curated_10
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10024..10884
DNA (861bp) protein (287aa)
Transcriptional regulator, MerR family n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q6A7_STANL
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ADD42282.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_11
Corynebacterium glyciniphilum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10960..11787
DNA (828bp) protein (276aa)
rRNA (Adenosine-2'-O-)-methyltransferase {ECO:0000313|EMBL:AHW63594.1}; EC=2.1.1.230 {ECO:0000313|EMBL:AHW63594.1};; TaxID=1404245 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glyciniphilum AJ 3170.;"
nhs; 23S rRNA methyltransferase (EC:2.1.1.-)
23S rRNA methyltransferase n=1 Tax=Salinispora pacifica RepID=UPI000380CD60
SCNpilot_expt_1000_bf_scaffold_346_curated_12
unknown

Not on your lists

comp(12014..12133)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_346_curated_13
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12341..12940)
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUQ0_BEUC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ78274.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_14
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12937..15612)
DNA (2676bp) protein (892aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
DNA gyrase subunit A n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUP9_BEUC1
SCNpilot_expt_1000_bf_scaffold_346_curated_15
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15740..17854)
DNA (2115bp) protein (705aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Ruania albidiflava RepID=UPI0003B59E86
SCNpilot_expt_1000_bf_scaffold_346_curated_16
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18217..18843)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUP7_BEUC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ78271.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_17
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18833..20074)
DNA (1242bp) protein (414aa)
DNA replication and repair protein RecF n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=RECF_BEUC1 rbh
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_18
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20160..21290)
DNA (1131bp) protein (377aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
DNA polymerase III subunit beta n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUP4_BEUC1
SCNpilot_expt_1000_bf_scaffold_346_curated_19
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21812..23353)
DNA (1542bp) protein (514aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BUP3_BEUC1
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_20
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23799..23957
DNA (159bp) protein (53aa)
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 id=7720415 bin=CNBR_ACT species=unknown genus=unknown taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_21
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24391..24762
DNA (372bp) protein (124aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C6N7_BEUC1
hypothetical protein; K08998 hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_22
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24868..26112
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI00031580FD
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC
60 kDa inner membrane insertion protein {ECO:0000313|EMBL:ACQ82460.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_23
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26161..26733
DNA (573bp) protein (191aa)
Single-stranded nucleic acid binding R3H domain-containing protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F7ZZE7_CELGA
single-stranded nucleic acid binding R3H domain-containing protein; K06346 spoIIIJ-associated protein
Single-stranded nucleic acid binding R3H domain-containing protein {ECO:0000313|EMBL:AEI13694.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_24
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26737..27606
DNA (870bp) protein (290aa)
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=RSMG_BEUC1
SCNpilot_expt_1000_bf_scaffold_346_curated_25
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29746..30723
DNA (978bp) protein (326aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C6N2_BEUC1
Cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ACQ82456.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_26
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30720..31802
DNA (1083bp) protein (361aa)
ParB-like partition protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C6N1_BEUC1
parB-like partition protein; K03497 chromosome partitioning protein, ParB family
ParB-like partition protein {ECO:0000313|EMBL:ACQ82455.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_27

Not on your lists

comp(32037..32330)
DNA (294bp) protein (98aa)
Putative integron gene cassette protein (Fragment) n=1 Tax=uncultured bacterium RepID=B0BGY6_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48044.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_346_curated_28
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32400..33374)
DNA (975bp) protein (325aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
D-alanine--D-alanine ligase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C6M9_BEUC1
SCNpilot_expt_1000_bf_scaffold_346_curated_29
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33421..34779)
DNA (1359bp) protein (453aa)
Putative transcriptional regulator, GntR family n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C6M8_BEUC1
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ACQ82452.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_346_curated_30
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34880..35209)
DNA (330bp) protein (110aa)
thioredoxin n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002627CD7
thioredoxin; K03671 thioredoxin 1
Tax=BJP_IG2069_Syntrophobacterales_46_30
Displaying items 1-30 of 243 in total

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