ggKbase home page

SCNpilot_cont_1000_p_scaffold_12_curated

Search features with annotation key words

Displaying items 1-30 of 591 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_12_curated_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

431..1825
DNA (1395bp) protein (465aa)
RNA methyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6DD13
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ACU63892.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_12_curated_2
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1939..2226)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6A194
Uncharacterized protein {ECO:0000313|EMBL:KGO91362.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
SCNpilot_cont_1000_p_scaffold_12_curated_3
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(2276..3049)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YRR0_9CHLB
Uncharacterized protein {ECO:0000313|EMBL:EAT58955.1}; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
restriction endonuclease; K07454 putative restriction endonuclease
SCNpilot_cont_1000_p_scaffold_12_curated_4
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3046..4857)
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AQP2_FLELS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM06277.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
SCNpilot_cont_1000_p_scaffold_12_curated_5
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5236..5718)
DNA (483bp) protein (161aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
CMP/dCMP deaminase zinc-binding n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y039_9SPHI
cytosine/adenosine deaminase
SCNpilot_cont_1000_p_scaffold_12_curated_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5718..6113)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMJ0_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58534.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_12_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6094..6429)
DNA (336bp) protein (112aa)
Export-related chaperone CsaA n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y040_9SPHI
Export-related chaperone CsaA {ECO:0000313|EMBL:EHQ27949.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
export-related chaperone CsaA; K06878 tRNA-binding protein
SCNpilot_cont_1000_p_scaffold_12_curated_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6433..6969)
DNA (537bp) protein (179aa)
Metal-dependent hydrolase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YD84_9SPHI
Metal-dependent hydrolase {ECO:0000313|EMBL:EHQ27110.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_12_curated_9
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7048..8874
DNA (1827bp) protein (609aa)
FAD dependent oxidoreductase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B478E2
Glucose-inhibited division protein A {ECO:0000313|EMBL:EHQ27111.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
SCNpilot_cont_1000_p_scaffold_12_curated_10
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8922..9692
DNA (771bp) protein (257aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YAW0_9SPHI
Exodeoxyribonuclease III {ECO:0000313|EMBL:EHQ29569.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_12_curated_11
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9852..11384)
DNA (1533bp) protein (511aa)
Beta-lactamase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZM8_9SPHI
Beta-lactamase {ECO:0000313|EMBL:EHQ26672.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
beta-lactamase
SCNpilot_cont_1000_p_scaffold_12_curated_12
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11475..13658
DNA (2184bp) protein (728aa)
dipeptidyl-peptidase IV; K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5]
Peptidase S9B dipeptidylpeptidase IV domain protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZM7_9SPHI
Peptidase S9B dipeptidylpeptidase IV domain protein {ECO:0000313|EMBL:EHQ26671.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_12_curated_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13844..14218
DNA (375bp) protein (125aa)
Response regulator receiver protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YC08_9SPHI
Response regulator receiver protein {ECO:0000313|EMBL:EHQ27086.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
response regulator receiver protein
SCNpilot_cont_1000_p_scaffold_12_curated_14
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14272..16326)
DNA (2055bp) protein (685aa)
Peptidase M13 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5K3_9SPHI
Peptidase M13 {ECO:0000313|EMBL:EHQ29355.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
putative metalloendopeptidase
SCNpilot_cont_1000_p_scaffold_12_curated_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16895..18034
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B51552
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AFD08496.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_cont_1000_p_scaffold_12_curated_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18092..19324
DNA (1233bp) protein (411aa)
redoxin n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6FD6E
Redoxin domain protein {ECO:0000313|EMBL:EHQ26767.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
peroxiredoxin
SCNpilot_cont_1000_p_scaffold_12_curated_17
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19384..20241)
DNA (858bp) protein (286aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
1,4-dihydroxy-6-naphthoate synthase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6E5A9
hypothetical protein; K07083
SCNpilot_cont_1000_p_scaffold_12_curated_18
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20311..21078)
DNA (768bp) protein (256aa)
exodeoxyribonuclease III Xth (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4C629
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:EHQ27285.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_12_curated_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21163..21873)
DNA (711bp) protein (237aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
peptidylprolyl isomerase, partial n=1 Tax=Cytophagales str. B6 RepID=UPI0003B611B3
peptidyl-prolyl cis-trans isomerase
SCNpilot_cont_1000_p_scaffold_12_curated_20
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21888..22241)
DNA (354bp) protein (118aa)
hypothetical protein, partial n=1 Tax=Cytophagales str. B6 RepID=UPI0003B5C53E
Uncharacterized protein {ECO:0000313|EMBL:KIA93145.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_12_curated_21
unknown

Not on your lists

22439..22699
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_12_curated_22
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22774..25074
DNA (2301bp) protein (767aa)
biopolymer transporter TonB n=1 Tax=Pedobacter agri RepID=UPI00029B03E4
Energy transducer TonB {ECO:0000313|EMBL:KIA93155.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
outer membrane insertion C-terminal signal; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_1000_p_scaffold_12_curated_23
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25161..25766)
DNA (606bp) protein (202aa)
HAD superfamily hydrolase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
HAD family hydrolase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B43832
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:EHQ26962.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_12_curated_24
unknown

Not on your lists

comp(25763..26158)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4ACDA
SCNpilot_cont_1000_p_scaffold_12_curated_25
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26239..26712)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SWI9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU28770.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_12_curated_26
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26705..28015)
DNA (1311bp) protein (437aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
threonine synthase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6319F
Threonine synthase {ECO:0000313|EMBL:KIA95416.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
SCNpilot_cont_1000_p_scaffold_12_curated_27
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28218..29222)
DNA (1005bp) protein (335aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39]
homoserine kinase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6E65E
SCNpilot_cont_1000_p_scaffold_12_curated_28
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29345..31795)
DNA (2451bp) protein (817aa)
aspartate kinase; K12524 bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
aspartokinase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B577EE
Aspartate kinase {ECO:0000313|EMBL:EHQ26959.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_12_curated_29
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31813..33057
DNA (1245bp) protein (415aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
ribosome small subunit-dependent GTPase A; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
GTPase RsgA n=1 Tax=Cytophagales str. B6 RepID=UPI0003B7501C
SCNpilot_cont_1000_p_scaffold_12_curated_30
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33222..33674
DNA (453bp) protein (151aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6BD83
D-tyrosyl-tRNA(Tyr) deacylase
Displaying items 1-30 of 591 in total

View Taxonomy