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SCNpilot_cont_1000_p_scaffold_7_curated_17

Organism: scnpilot_dereplicated_Mucilaginibacter_1

near complete RP 52 / 55 MC: 3 BSCG 50 / 51 ASCG 15 / 38
Location: comp(26354..26956)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM46_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 41.0
  • Coverage: 200.0
  • Bit_score: 142
  • Evalue 5.40e-31
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 41.0
  • Coverage: 200.0
  • Bit_score: 142
  • Evalue 1.70e-31
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU62260.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.0
  • Coverage: 200.0
  • Bit_score: 142
  • Evalue 7.60e-31

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 603
GTGCCTGTTTACAAAACTATAAGCGACGAACAGTTGGTCCTACATTTAAAAGACGGAGACCATGCCGCTTTTGCAGAGATATATAATCGGCATTGGGAGACCATGGCCGATGCGGCTTACCAGCGTTTGAGGTCCCGTGAAGAGGCGGAAGAAGTGGTTCAAGAGGTATTTGTAAGTTTATATCTGCGGAGGGCCGAATTATCGCCTAAGTCGTCCTTGATAGCTTACCTCAAAACCGCATTAAAGTATAAAGTGATAGATGCTTACCGAGCACAGGAAATGCATCAAAGGCATATTGCTGGAATTGTTGAATATTCAATTACATCCGGCTTAGTTCCCGATGACGGACTATGTGTTAAAGAGCTTCAGGGTGAGATCATGAGGATTGTCCAAACGTTACCACCAAAATGTCGGGAAGTTTTTGTAAAAAGCCGCTTTGAACATTTGTCTCATAGGTTCATAGCAGAAAATATGGGCATTTCTATCAGCACAGTAAAAAAGCACTTATATAAAGCAACAGAAACGCTAAAGAGTAAACTGGGGGGAAATCATTCTGATTTTTTGTCAATTCTACTTTTTCTGTTGTATATAAAAAATAGCTGA
PROTEIN sequence
Length: 201
VPVYKTISDEQLVLHLKDGDHAAFAEIYNRHWETMADAAYQRLRSREEAEEVVQEVFVSLYLRRAELSPKSSLIAYLKTALKYKVIDAYRAQEMHQRHIAGIVEYSITSGLVPDDGLCVKELQGEIMRIVQTLPPKCREVFVKSRFEHLSHRFIAENMGISISTVKKHLYKATETLKSKLGGNHSDFLSILLFLLYIKNS*